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obophenotype / cell-ontology

An ontology of cell types
https://obophenotype.github.io/cell-ontology/
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Add linkouts to CellGuide for curated/validated defs #2216

Open dosumis opened 9 months ago

dosumis commented 9 months ago

For all terms in https://docs.google.com/spreadsheets/d/13NJsDH0fBZEFYuGZYkJ2QUah9WV9731zliiW-9uOTuA/edit#gid=2059655613

xrefs → CL for all reviewed definitions Bioregistry needs a cell Guide entry - base https://cellxgene.cziscience.com/cellguide/ or https://cellxgene.cziscience.com/cellguide/CL_ CL terms get xrefs: cellguide:CL_0002623 OR cellguide:0002623

Once released this should => links to CellGuide on OLS4

dosumis commented 9 months ago

@anitacaron - just checking this is on agenda for tech team. Thanks!

anitacaron commented 8 months ago

Requested new prefix in Bioregistry https://github.com/biopragmatics/bioregistry/issues/1001

dosumis commented 8 months ago

@anitacaron - Given discussion on bioregistry and linked OLS tickets, I think we should change plan and add URLs directly to term using seeAlso as predicate. I would also like to annotate this axiom with some link text so that consumers of the ontology don't have to display raw URLs. Not sure of best predicate for that. Maybe rdfs:label?

dosumis commented 7 months ago

@hkir-dev - can you add CellGuide URLs as part of the process for adding subset tags for CxG Census? We will also need CellGuide URLs for ancestor classes in CL for all terms in census. These should be rdfs:SeeAlso AP + typed IRI. Could you also investigate whether there is a standard way add hyperlink text to links in seeAlso?

github-actions[bot] commented 1 month ago

This issue has not seen any activity in the past 6 months; it will be closed automatically in one year from now if no action is taken.