obophenotype / cell-ontology

An ontology of cell types
https://obophenotype.github.io/cell-ontology/
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[NTR-cxg] nasal serous secreting cell #2316

Closed AvolaAmg closed 3 months ago

AvolaAmg commented 6 months ago

Please check that the term does not already exist by using the ontology search tool OLS: https://www.ebi.ac.uk/ols4/ontologies/cl

I have not found extensive information on the exact location of nasal serous secreting cells, I just decided to include "nasal cavity" only. Suggestions are welcome.

IMPORTANT: This cell has been identified from a CellxGene dataset through a knowledge graph analysis. Tracker for novel cell terms identified from CxG dataset through knowledge graphs can be found here.

Preferred term label nasal serous secreting cell

Synonym(s) (add reference(s), please) SMG serous (nasal)

Definition (free text, with reference(s), please. PubMed ID format is PMID:XXXXXX) A serous secreting cell that is part of the nasal cavity.

Parent cell type term (check the hierarchy here https://www.ebi.ac.uk/ols4/ontologies/cl) serous secreting cell

Anatomical structure where the cell type is found (check Uberon for anatomical structures: https://www.ebi.ac.uk/ols4/ontologies/uberon) nasal cavity

Your ORCID https://orcid.org/0000-0002-0098-8958

Additional notes or concerns If there are markers that uniquely identify the cell type in a particular species, they can be added here. The CellxGene dataset found to identify this cell type is from this paper PMID:37291214

AvolaAmg commented 6 months ago

@aleixpuigb

emquardokus commented 6 months ago

SMG stands for submucosal gland which is the region of this cell type in the nasal cavity. I am getting more information from research group as this is part of lung combined HLCA

aleixpuigb commented 6 months ago

Since there is not a nasal submucosal gland, it would be good that this cell term is also 'part of' some 'submucosal gland', and if the Uberon term is created it will be reasoned.

emquardokus commented 6 months ago

I was working up a new list of NTRs and this was on it with appropriate uberon NTRs.

scheuerm commented 6 months ago

Probably a silly question but what is NTR?

emquardokus commented 6 months ago

@scheuerm New Term Request (NTR) 😁