obophenotype / cell-ontology

An ontology of cell types
https://obophenotype.github.io/cell-ontology/
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Clean up hierarchy immediately under neuron #2348

Open dosumis opened 6 months ago

dosumis commented 6 months ago

If it is a grouping class:

If it is not a grouping class:

### Adjust hierarchy under neuron
- [ ] https://github.com/obophenotype/cell-ontology/issues/2654
- [ ] https://github.com/obophenotype/cell-ontology/issues/2655
- [ ] https://github.com/obophenotype/cell-ontology/issues/2656
- [ ] https://github.com/obophenotype/cell-ontology/issues/2657
- [ ] https://github.com/obophenotype/cell-ontology/issues/2658
- [ ] https://github.com/obophenotype/cell-ontology/issues/2659
- [ ] https://github.com/obophenotype/cell-ontology/issues/2660
- [ ] https://github.com/obophenotype/cell-ontology/issues/2661
- [ ] https://github.com/obophenotype/cell-ontology/issues/2662
- [ ] https://github.com/obophenotype/cell-ontology/issues/2685
- [ ] Merge periphery sensory neuron and sensory neuron
- [ ] https://github.com/obophenotype/cell-ontology/issues/2679
- [ ] #2727
- [ ] Adjust hierarchy of retinal cells
- [ ] Missing definition CNS long range interneuron and CNS short range interneuron
- [ ] Adjust definition of interneuron
- [ ] Adjust hierarchy of some glial cells (see comments below)
- [ ] adjust definition of sensory processing neuron (neurons of the CNS that process information from the peripheral sensory neurons)
- [ ] Adjust CNS interneruons (subdivide them into CNS vertebrata and CNS nematoda)
AvolaAmg commented 6 months ago

Not immediately under neuron, this is under interneuron, but it is a class hierarchy related to neurons #2357 .

AvolaAmg commented 4 weeks ago
AvolaAmg commented 4 weeks ago

Discussion to have: @dosumis do we need to have the term interneuron and the CNS interneuron as two separate terms? Interneurons are only and exclusively present in the central nervous system, I think having two terms is redundant and we should merge them and have CNS interneuron has an exact synonym

AvolaAmg commented 4 weeks ago

Discussion to have: @dosumis I think we need to merge peripheral sensory neuron and sensory neuron in one single term as all sensory neurons are in the periphery.

AvolaAmg commented 4 weeks ago

One more discussion @dosumis CNS sensu invertebrate could be deleted as it has only exclusively Kenyon Cells underneath the terms and then the CNS sensu vertebrata can be merged with central nervous system neuron cell type

AvolaAmg commented 4 weeks ago

These cells should not be under neuron. I think it has to do with the soma location, substitute it with 'part of' some 'location in the nervous system'

also make neuron and glial cell disjoint axiom after the fix is done.

image

AvolaAmg commented 1 week ago

have a look at the lateral line ganglion neuron. this neuron is found in fish, perhaps it would be possible to group it with the other primary and secondary sensory neurons (sensu Teleostei)