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obophenotype / cell-ontology

An ontology of cell types
https://obophenotype.github.io/cell-ontology/
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Fixes #2476 NTR- intestinal villus capillary endothelial cell #2572

Closed Caroline-99 closed 1 week ago

Caroline-99 commented 1 week ago
Caroline-99 commented 1 week ago

gogoeditdiff

Caroline-99 commented 1 week ago

gogoeditdiff

github-actions[bot] commented 1 week ago
Here's a diff of how these changes impact the classified ontology (on -simple file): # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/cl/cl-simple.owl` - Version IRI: `http://purl.obolibrary.org/obo/cl/releases/2024-09-17/cl-simple.owl` - Loaded from: `file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/cl/cl-simple.owl` - Version IRI: `http://purl.obolibrary.org/obo/cl/releases/2024-09-17/cl-simple.owl` - Loaded from: `file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl` ### Ontology imports ### Ontology annotations ### intestinal villus capillary endothelial cell `http://purl.obolibrary.org/obo/CL_4052003` #### Added - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) [date](http://purl.org/dc/terms/date) "2024-09-17T10:03:25Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) [label](http://www.w3.org/2000/01/rdf-schema#label) "intestinal villus capillary endothelial cell" - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "villus tip endothelial cell" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:38051275" - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) [contributor](http://purl.org/dc/terms/contributor) [0009-0000-8480-9277](https://orcid.org/0009-0000-8480-9277) - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A capillary endothelial cell that is part of the intestinal villus. This cell is highly fenestrated, with fenestrations most numerous at the villus tips, and plays a vital role in nutrient absorption and maintaining the selective permeability of the intestinal barrier." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:38051275" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:35810168" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:18480313" - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "villus blood capillary endothelial cells" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:35810168" - Class: [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) SubClassOf [fenestrated endothelial cell](http://purl.obolibrary.org/obo/CL_0000666) - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) SubClassOf [capillary endothelial cell](http://purl.obolibrary.org/obo/CL_0002144)
github-actions[bot] commented 1 week ago
Here's a diff of your edit file (unreasoned) # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/cl.owl` - Version IRI: *None* - Loaded from: `file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/cl.owl` - Version IRI: *None* - Loaded from: `file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl` ### Ontology imports ### Ontology annotations ### intestinal villus capillary endothelial cell `http://purl.obolibrary.org/obo/CL_4052003` #### Added - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) [date](http://purl.org/dc/terms/date) "2024-09-17T10:03:25Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) [label](http://www.w3.org/2000/01/rdf-schema#label) "intestinal villus capillary endothelial cell" - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "villus tip endothelial cell" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:38051275" - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) [contributor](http://purl.org/dc/terms/contributor) [0009-0000-8480-9277](https://orcid.org/0009-0000-8480-9277) - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A capillary endothelial cell that is part of the intestinal villus. This cell is highly fenestrated, with fenestrations most numerous at the villus tips, and plays a vital role in nutrient absorption and maintaining the selective permeability of the intestinal barrier." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:38051275" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:35810168" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:18480313" - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "villus blood capillary endothelial cells" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:35810168" - Class: [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) EquivalentTo [capillary endothelial cell](http://purl.obolibrary.org/obo/CL_0002144) and ([part of](http://purl.obolibrary.org/obo/BFO_0000050) some [intestinal villus](http://purl.obolibrary.org/obo/UBERON_0001213)) - [intestinal villus capillary endothelial cell](http://purl.obolibrary.org/obo/CL_4052003) SubClassOf [bearer of](http://purl.obolibrary.org/obo/RO_0000053) some [fenestrated](http://purl.obolibrary.org/obo/PATO_0002064)