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obophenotype / cell-ontology

An ontology of cell types
https://obophenotype.github.io/cell-ontology/
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2562 ntrepithelial stem cell of gut #2601

Closed JABelfiore closed 5 days ago

JABelfiore commented 6 days ago

Definition added

Caroline-99 commented 6 days ago

gogoeditdiff

github-actions[bot] commented 6 days ago
Here's a diff of how these changes impact the classified ontology (on -simple file): # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/cl/cl-simple.owl` - Version IRI: `http://purl.obolibrary.org/obo/cl/releases/2024-09-23/cl-simple.owl` - Loaded from: `file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/cl/cl-simple.owl` - Version IRI: `http://purl.obolibrary.org/obo/cl/releases/2024-09-23/cl-simple.owl` - Loaded from: `file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl` ### Ontology imports ### Ontology annotations ### epithelial stem cell of gut `http://purl.obolibrary.org/obo/CL_4047020` #### Added - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) [label](http://www.w3.org/2000/01/rdf-schema#label) "epithelial stem cell of gut"@en - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) [contributor](http://purl.org/dc/terms/contributor) [0009-0005-7919-4905](https://orcid.org/0009-0005-7919-4905) - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) [has exact synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "IESCs" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24326621" - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An epithelial stem cell located in a stem cell niche at the base of intestinal crypts. This cell is capable of self-renewal and multipotent differentiation into all intestinal epithelial cell types including enterocytes, goblet cells, enteroendocrine cells, and paneth cells. These cells divide rapidly to maintain epithelial homeostatis. A variety of adjacent cell types secrete signals that support and maintain the identity of this cell type in the niche, including Paneth Cells and specialised fibroblasts. Expresses marker LGR5 in humans and markers ASCL2 and SMOC2 in mice." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24326621" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:38835047" - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) [date](http://purl.org/dc/terms/date) "2024-09-23T15:07:03Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - Class: [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) SubClassOf [intestinal crypt stem cell](http://purl.obolibrary.org/obo/CL_0002250) - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) SubClassOf [epithelial fate stem cell](http://purl.obolibrary.org/obo/CL_0000036)
github-actions[bot] commented 6 days ago
Here's a diff of your edit file (unreasoned) # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/cl.owl` - Version IRI: *None* - Loaded from: `file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/cl.owl` - Version IRI: *None* - Loaded from: `file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl` ### Ontology imports ### Ontology annotations ### base of crypt of Lieberkuhn `http://purl.obolibrary.org/obo/UBERON_0013739` #### Added - Class: [base of crypt of Lieberkuhn](http://purl.obolibrary.org/obo/UBERON_0013739) ### epithelial stem cell of gut `http://purl.obolibrary.org/obo/CL_4047020` #### Added - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) [label](http://www.w3.org/2000/01/rdf-schema#label) "epithelial stem cell of gut"@en - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) [contributor](http://purl.org/dc/terms/contributor) [0009-0005-7919-4905](https://orcid.org/0009-0005-7919-4905) - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) [has exact synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "IESCs" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24326621" - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An epithelial stem cell located in a stem cell niche at the base of intestinal crypts. This cell is capable of self-renewal and multipotent differentiation into all intestinal epithelial cell types including enterocytes, goblet cells, enteroendocrine cells, and paneth cells. These cells divide rapidly to maintain epithelial homeostatis. A variety of adjacent cell types secrete signals that support and maintain the identity of this cell type in the niche, including Paneth Cells and specialised fibroblasts. Expresses marker LGR5 in humans and markers ASCL2 and SMOC2 in mice." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24326621" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:38835047" - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) [date](http://purl.org/dc/terms/date) "2024-09-23T15:07:03Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - Class: [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) SubClassOf [part of](http://purl.obolibrary.org/obo/BFO_0000050) some [base of crypt of Lieberkuhn](http://purl.obolibrary.org/obo/UBERON_0013739) - [epithelial stem cell of gut](http://purl.obolibrary.org/obo/CL_4047020) SubClassOf [epithelial fate stem cell](http://purl.obolibrary.org/obo/CL_0000036)
JABelfiore commented 5 days ago

@Caroline-99 Based on our discussions this morning lets leave this term for this round.