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obophenotype / cell-ontology

An ontology of cell types
https://obophenotype.github.io/cell-ontology/
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Fixes #2695 #2468 Re-labelled glandular cell of endometrium and improved classifications #2697

Closed Caroline-99 closed 4 weeks ago

Caroline-99 commented 4 weeks ago

Fixes #2695 #2468

Related #1760

Caroline-99 commented 4 weeks ago

gogoeditdiff

github-actions[bot] commented 4 weeks ago
Here's a diff of how these changes impact the classified ontology (on -simple file): # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/cl/cl-simple.owl` - Version IRI: `http://purl.obolibrary.org/obo/cl/releases/2024-10-28/cl-simple.owl` - Loaded from: `file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/cl/cl-simple.owl` - Version IRI: `http://purl.obolibrary.org/obo/cl/releases/2024-10-28/cl-simple.owl` - Loaded from: `file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl` ### Ontology imports ### Ontology annotations ### glandular cell of endometrium `http://purl.obolibrary.org/obo/CL_0002656` #### Removed - [glandular cell of endometrium](http://purl.obolibrary.org/obo/CL_0002656) [label](http://www.w3.org/2000/01/rdf-schema#label) "glandular cell of endometrium" #### Added - [glandular cell of endometrium](http://purl.obolibrary.org/obo/CL_0002656) [label](http://www.w3.org/2000/01/rdf-schema#label) "glandular endometrial unciliated epithelial cell" - [glandular cell of endometrium](http://purl.obolibrary.org/obo/CL_0002656) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "glandular cell of endometrium" ### glandular endometrial ciliated epithelial cell `http://purl.obolibrary.org/obo/CL_4030042` #### Added - [glandular endometrial ciliated epithelial cell](http://purl.obolibrary.org/obo/CL_4030042) SubClassOf [epithelial cell of endometrial gland](http://purl.obolibrary.org/obo/CL_0009084)
github-actions[bot] commented 4 weeks ago
Here's a diff of your edit file (unreasoned) # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/cl.owl` - Version IRI: *None* - Loaded from: `file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/cl.owl` - Version IRI: *None* - Loaded from: `file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl` ### Ontology imports ### Ontology annotations ### epithelial cell of endometrial gland `http://purl.obolibrary.org/obo/CL_0009084` #### Removed - [epithelial cell of endometrial gland](http://purl.obolibrary.org/obo/CL_0009084) EquivalentTo [epithelial cell](http://purl.obolibrary.org/obo/CL_0000066) and ([part of](http://purl.obolibrary.org/obo/BFO_0000050) some [endometrial gland](http://purl.obolibrary.org/obo/UBERON_0002451)) #### Added - [epithelial cell of endometrial gland](http://purl.obolibrary.org/obo/CL_0009084) EquivalentTo [epithelial cell](http://purl.obolibrary.org/obo/CL_0000066) and ([part of](http://purl.obolibrary.org/obo/BFO_0000050) some [endometrium glandular epithelium](http://purl.obolibrary.org/obo/UBERON_0012276)) ### glandular endometrial unciliated epithelial cell `http://purl.obolibrary.org/obo/CL_0002656` #### Removed - [glandular endometrial unciliated epithelial cell](http://purl.obolibrary.org/obo/CL_0002656) [label](http://www.w3.org/2000/01/rdf-schema#label) "glandular cell of endometrium" #### Added - [glandular endometrial unciliated epithelial cell](http://purl.obolibrary.org/obo/CL_0002656) [label](http://www.w3.org/2000/01/rdf-schema#label) "glandular endometrial unciliated epithelial cell" - [glandular endometrial unciliated epithelial cell](http://purl.obolibrary.org/obo/CL_0002656) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "glandular cell of endometrium"