search

obophenotype / cell-ontology

An ontology of cell types
https://obophenotype.github.io/cell-ontology/
Creative Commons Attribution 4.0 International
146 stars 49 forks source link

NTR-Melanin-concetrating-hormone-neuron-and-Molecular-layer-interneuron #2720

Closed AvolaAmg closed 2 weeks ago

AvolaAmg commented 3 weeks ago

Fixes #2669 Fixes #2668

Caroline-99 commented 3 weeks ago

gogoeditdiff

github-actions[bot] commented 3 weeks ago
Here's a diff of how these changes impact the classified ontology (on -base file): # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/cl/cl-base.owl` - Version IRI: `http://purl.obolibrary.org/obo/cl/releases/2024-11-08/cl-base.owl` - Loaded from: `file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/cl/cl-base.owl` - Version IRI: `http://purl.obolibrary.org/obo/cl/releases/2024-11-08/cl-base.owl` - Loaded from: `file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl` ### Ontology imports ### Ontology annotations ### melanin-concentrating hormone neuron `http://purl.obolibrary.org/obo/CL_4042036` #### Added - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Nearly all melanin-concentrating hormone neurons express the glutamate transporter VGlut2, however a small subset of them expresses the machinery for GABA release and neurotransmission." - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:38020069" - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) [label](http://www.w3.org/2000/01/rdf-schema#label) "melanin-concentrating hormone neuron"@en - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A neuron of the central nervous system with its soma primarily located in the lateral hypothalamic area and surrounding regions, including the zona incerta. This neuron type expresses melanin-concentrating hormone and is involved in regulating various physiological processes, including sleep, feeding behavior, and energy homeostasis." - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:39035036" - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:38020069" - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30284033" - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) [date](http://purl.org/dc/terms/date) "2024-10-31T16:03:26Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) [hasRelatedSynonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "MCH neuron" - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30284033" - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0098-8958](https://orcid.org/0000-0002-0098-8958) - Class: [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) SubClassOf [central nervous system neuron](http://purl.obolibrary.org/obo/CL_2000029) ### molecular layer interneuron `http://purl.obolibrary.org/obo/CL_4042035` #### Added - [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) [date](http://purl.org/dc/terms/date) "2024-10-31T15:55:31Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0098-8958](https://orcid.org/0000-0002-0098-8958) - [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) [hasRelatedSynonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "MLI" - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:33075461" - [hasRelatedSynonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) [OMO_0003000](http://purl.obolibrary.org/obo/OMO_0003000) - [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A type of cerebellar inhibitory GABAergic interneuron that is located in the molecular layer of the cerebellum. This cell type inhibits Purkinje cells and other molecular layer interneurons. This interneuron plays a crucial role in regulating cerebellar output through feedforward inhibition and is characterized by its fast-spiking properties." - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30742002" - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:34616064" - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:33075461" - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:38692278" - [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) [label](http://www.w3.org/2000/01/rdf-schema#label) "molecular layer interneuron"@en - Class: [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) - [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) SubClassOf [cerebellar neuron](http://purl.obolibrary.org/obo/CL_1001611)
github-actions[bot] commented 3 weeks ago
Here's a diff of your edit file (unreasoned) # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/cl.owl` - Version IRI: *None* - Loaded from: `file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/cl.owl` - Version IRI: *None* - Loaded from: `file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl` ### Ontology imports ### Ontology annotations ### melanin-concentrating hormone neuron `http://purl.obolibrary.org/obo/CL_4042036` #### Added - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Nearly all melanin-concentrating hormone neurons express the glutamate transporter VGlut2, however a small subset of them expresses the machinery for GABA release and neurotransmission." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:38020069" - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) [label](http://www.w3.org/2000/01/rdf-schema#label) "melanin-concentrating hormone neuron"@en - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A neuron of the central nervous system with its soma primarily located in the lateral hypothalamic area and surrounding regions, including the zona incerta. This neuron type expresses melanin-concentrating hormone and is involved in regulating various physiological processes, including sleep, feeding behavior, and energy homeostasis." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:38020069" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30284033" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:39035036" - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) [date](http://purl.org/dc/terms/date) "2024-10-31T16:03:26Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "MCH neuron" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30284033" - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0098-8958](https://orcid.org/0000-0002-0098-8958) - Class: [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) - [melanin-concentrating hormone neuron](http://purl.obolibrary.org/obo/CL_4042036) SubClassOf [central nervous system neuron](http://purl.obolibrary.org/obo/CL_2000029) ### molecular layer interneuron `http://purl.obolibrary.org/obo/CL_4042035` #### Added - [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) [date](http://purl.org/dc/terms/date) "2024-10-31T15:55:31Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0098-8958](https://orcid.org/0000-0002-0098-8958) - [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "MLI" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:33075461" - [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) [abbreviation](http://purl.obolibrary.org/obo/OMO_0003000) - [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A type of cerebellar inhibitory GABAergic interneuron that is located in the molecular layer of the cerebellum. This cell type inhibits Purkinje cells and other molecular layer interneurons. This interneuron plays a crucial role in regulating cerebellar output through feedforward inhibition and is characterized by its fast-spiking properties." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:34616064" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:33075461" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30742002" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:38692278" - [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) [label](http://www.w3.org/2000/01/rdf-schema#label) "molecular layer interneuron"@en - Class: [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) - [molecular layer interneuron](http://purl.obolibrary.org/obo/CL_4042035) SubClassOf [cerebellar neuron](http://purl.obolibrary.org/obo/CL_1001611)
Caroline-99 commented 2 weeks ago

gogoeditdiff