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obophenotype / cell-ontology

An ontology of cell types
https://obophenotype.github.io/cell-ontology/
Creative Commons Attribution 4.0 International
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2725 Add CellMark CLM-CL component #2772

Open gouttegd opened 1 week ago

gouttegd commented 1 week ago

This PR supersedes #2763. It adds the CLM-CL component, but does so while avoiding to overwrite CL’s customised QC workflow.

gouttegd commented 1 week ago

Draft PR as in its current state, the CLM-CL component would cause a build failure because of duplicated labels in CLM-CL (https://github.com/Cellular-Semantics/CellMark/issues/9).

(This is exactly why it is important to uncouple the refreshing of external resources from the QC/release workflows: when external resources are unconditionally refreshed as part of all workflows, as is currently the case, we can end up with build failures at any time because of changes that have happened elsewhere and are totally out of CL’s control. #2644)

gouttegd commented 1 week ago

PR updated to only refresh the CLM-CL components (as well as all other components) when MIR is true (e.g. when imports are updated with make refresh-imports).