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obophenotype / cell-ontology

An ontology of cell types
https://obophenotype.github.io/cell-ontology/
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cardiac neural crest cell #350

Closed cmungall closed 2 years ago

cmungall commented 13 years ago

We have several 'cardiac neural crest cell' process terms in GO:

E.g: cardiac neural crest cell development involved in heart development ; GO:0061308 cardiac neural crest cell development involved in outflow tract morphogenesis ; GO:0061309 cardiac neural crest cell differentiation involved in heart development ; GO:0061307 cardiac neural crest cell migration involved in outflow tract morphogenesis ; GO:0003253

Could a corresponding 'cardiac neural crest cell' term be added to the cell ontology, please? is_a: neural crest cell ; CL:0000333

presumably with the following child (derived_from) cardiac mesenchymal cell ; CL:0000569

PMID: 16054405 PMID: 20890117 PMID: 12490557

Thanks, Becky

Original comment by: nobody

cmungall commented 9 years ago

Original comment by: nicolevasilevsky

cmungall commented 9 years ago

Yvonne/Melissa?

On 2 Dec 2014, at 13:17, Nicole Vasilevsky wrote:

  • assigned_to: Nicole Vasilevsky

\ [cell-ontology-cl-requests:#169] cardiac neural crest cell**

Status: open Group: GO-Cell-XP Created: Mon Oct 31, 2011 04:07 PM UTC by RFoulger Last Updated: Mon Oct 31, 2011 04:07 PM UTC Owner: Nicole Vasilevsky

We have several 'cardiac neural crest cell' process terms in GO:

E.g: cardiac neural crest cell development involved in heart development ; GO:0061308 cardiac neural crest cell development involved in outflow tract morphogenesis ; GO:0061309 cardiac neural crest cell differentiation involved in heart development ; GO:0061307 cardiac neural crest cell migration involved in outflow tract morphogenesis ; GO:0003253

Could a corresponding 'cardiac neural crest cell' term be added to the cell ontology, please? is_a: neural crest cell ; CL:0000333

presumably with the following child (derived_from) cardiac mesenchymal cell ; CL:0000569

PMID: 16054405 PMID: 20890117 PMID: 12490557

Thanks, Becky

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Original comment by: cmungall

cmungall commented 9 years ago

I would like this new term added as well as the following related terms:

cardiac neural crest cell to support MP:0012747 and subclasses

cranial neural crest cell to support MP:0012754 and subclases http://discovery.lifemapsc.com/in-vivo-development/neural-crest/cranial-neural-crest http://embryology.med.unsw.edu.au/embryology/index.php?title=Neural_Crest_Development#Cranial_neural_crest http://en.wikipedia.org/wiki/Cranial_neural_crest

enteric neural crest cell to support MP:0013001 and subclasses PMID:17514199

trunk neural crest cell to support id: MP:0013012 and subclasses http://www.ncbi.nlm.nih.gov/books/NBK10065/

vagal neural crest cell to support MP:0013010 and subclasses PMID:22016183

Original comment by: nobody

cmungall commented 9 years ago

Oops- just realized the following three terms already exist; are these the same thing? Are these neural crest cell types always 'migratory'? The first two terms below require text definitions.

CL:0000008 migratory cranial neural crest cell CL:0000011 migratory trunk neural crest cell CL:0002607 migratory enteric neural crest cell

Original comment by: nobody

cmungall commented 9 years ago

There is also premigratory neural crest cell in CL: CL_0007004

Original comment by: nicolevasilevsky

nicolevasilevsky commented 4 years ago

to do:

@mellybelly do you know the answer to @cmungall's question above: the following three terms already exist; are these the same thing? Are these neural crest cell types always 'migratory'?

ghost commented 2 years ago

Hi, @nicolevasilevsky, is this still an active issue? If not, can we close the ticket? If it requires more discussion, feel free to add to the next CL meeting agenda and invite parties who can provide input.

nicolevasilevsky commented 2 years ago

From a quick google search, it looks like 'migratory cardiac neural crest cell' is the same as cardiac neural crest cell: https://journals.biologists.com/dev/article/147/20/dev188706/225875/The-heart-of-the-neural-crest-cardiac-neural-crest

"Cardiac neural crest cells (cNCCs) are a migratory cell population that stem from the cranial portion of the neural tube. They undergo epithelial-to-mesenchymal transition and migrate through the developing embryo to give rise to portions of the outflow tract, the valves and the arteries of the heart"

I'll add a synonym.

@bvarner-ebi could I assign you as a reviewer?