obophenotype / developmental-stage-ontologies

Source files for various species-specific stage ontologies
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Relabel species-specific labels in HsapDv #3

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago

currently we have:

{{{
[Term]
id: HsapDv:0000118
name: 24 years
namespace: human_developmental_stage
def: "Young adult stage that refers to an adult who is over 24 and under 25." 
[Bgee:curator "Bgee"]
is_a: HsapDv:0000089 ! young adult stage
xref: EV:0300077
}}}

24 yo may be young adult in humans but not other animals.

Suggestion: relabel this "24 years old, human" or similar.

Alternative (not favored): we have this represent 24yo generically, and we 
change the link to 'young adult' to be a taxon GCI (hard).

Original issue reported on code.google.com by cmung...@gmail.com on 16 Jan 2013 at 5:51

GoogleCodeExporter commented 9 years ago
Done, see 
http://code.google.com/p/developmental-stage-ontologies/source/detail?r=37

id: HsapDv:0000002
- name: embryonic stage
+ name: embryonic human stage

=> modification done because the embryonic stage in a "human" meaning is 
different for other animals; the "embryonic human stage" does not include the 
"fetal stage" (which would be considered an embryo in other animals)

newborn stage
=> newborn human stage

xx LMP month
=> xx LMP month human stage

xx week post-fertilization
=> xx week post-fertilization human stage

xx month(s)
=> xx-month-old human stage

xx years
=> xx-year-old human stage

xx-xx year-old adult stage
=> xx-xx year-old human stage

The following stages were changed because the age range can vary between 
species: 

adult stage
=> human adult stage

early adulthood
=> human early adulthood stage

late adulthood
=> human late adulthood stage

middle aged stage
=> human middle aged stage

aged stage
=> human aged stage

Note: 
- "child stage", "infant stage", "adolescent stage" not changed (sounds very 
human specific), should we?

- stages with the same meaning as in Uberon not changed (adult, mature, ...)

Original comment by TheITGuy...@gmail.com on 5 Feb 2013 at 10:39