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obophenotype / developmental-stage-ontologies

Source files for various species-specific stage ontologies
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HsapDv:0000010 gastrula stage and HsapDv:0000011 Carnegie stage 06 #48

Closed ANiknejad closed 4 years ago

ANiknejad commented 7 years ago

Can these two be merged?

Carnegie Stage 06 is the only child of gastrula stage

see issue #41

ANiknejad commented 7 years ago

Merge DONE in hsapdv_4_hpoOxford.obo (local file)

ANiknejad commented 4 years ago

To close after proper merge in hsapdv.obo file

ANiknejad commented 4 years ago

maybe to remove (= to obsolete) HsapDv:0000010, but actually human gastrulation is also a process still occuring during CS07 too, not only CS06

CS07 definition: "Neurula stage during which the notochordal process appears, and gastrulation is continuing."

so @fbastian , what do you think? to conserve HsapDv:0000010 gastrula stage?

ANiknejad commented 4 years ago

we decided to conserve HsapDv:0000010 gastrula stage, but in the future we should allow a class to be child of different parents, here CS07 is child of HsapDv:0000012 (neurula stage) but should also be child of HsapDv:0000010 gastrula stage

uberon commented 4 years ago

This would be inconsistent with these two stages being consecutive. It would need to be an overlaps relation

On Mon, Feb 10, 2020 at 7:24 AM Anne Niknejad notifications@github.com wrote:

we decided to conserve HsapDv:0000010 gastrula stage, but in the future we should allow a class to be child of different parents, here CS07 is child of HsapDv:0000012 (neurula stage) but should also be child of HsapDv:0000010 gastrula stage

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