Open GoogleCodeExporter opened 9 years ago
[deleted comment]
Hi All,
any comments on this issue? do you plan to do changes in ZFS?
thank you in advance
Best regards,
Anne
Original comment by niknej...@gmail.com
on 4 Sep 2014 at 12:31
So far there has been no discussion of subdividing the Long-Pec stage through
the addition of hatching stages at 52 and 56 hpf. The staging is representative
of the Hatching Period as described here
http://zfin.org/zf_info/zfbook/stages/hatch_stgs.html The current state of the
ZFS has worked well for ZFIN curators and they have not expressed a need to
further subdivide the staging. Can you please explain your need for this change?
The addition of the term ‘Hatching’ stage could be added to the ontology to
better represent the subdivision of the stages as represented here
http://zfin.org/zf_info/zfbook/stages/index.html This would allow for the
stages Long-Pec, Pec-fin and Protruding mouth to be grouped under the
‘Hatching’ stage as described.
Original comment by ybradf...@zfin.org
on 4 Sep 2014 at 9:11
Hello,
Many thanks for your quick answer.
We annotate expression data reported in GEO, please have a look at this
experiment:
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5048
Here there are data at embryo stage 52hpf. We consider this period of time as
belonging to 'Hatching (48 - 72 h)'
'52hpf' and '56hpf' sound to be usual milestones for experiment in literature,
please see also http://www.ncbi.nlm.nih.gov/pubmed/?term=24504339
for in situ expression.
Yes, addition of a 'hatching stage' is a good idea, thank you in advance. We
will request a corresponding term to Uberon, as soon as you provide a nice
definition for this term.
Thank you again for all your efforts and your responsiveness.
Best regards,
Anne
Original comment by niknej...@gmail.com
on 8 Sep 2014 at 8:36
[deleted comment]
I've added hatching stage to ZFS. There has been no decision as of yet to add
the child terms 52hpf and 56hpf to the ontology.
Original comment by ybradf...@zfin.org
on 25 Sep 2014 at 9:23
Many thanks, Yvonne, for adding hatching stage to ZFS.
Could you please let me know when a (zfa.obo) release is planned?
Best regards,
Anne
Original comment by niknej...@gmail.com
on 13 Oct 2014 at 4:07
The ZFA will release in early November. The changes to the ZFS are in the
standalone file and will not be visible in the ZFA.
Original comment by zfinf...@gmail.com
on 21 Oct 2014 at 4:49
Original issue reported on code.google.com by
TheITGuy...@gmail.com
on 5 Feb 2013 at 8:59