Open jahilton opened 3 years ago
Hi @ANiknejad , have you had a chance to look at the possibility of adding this term?
Hi Jason,
Sorry for late answer. Actually we created decades in our hsapdv.obo ontology to hide the precise age of human samples, to accomodate GTEx decade public annotations. But thank you to make us aware about the special case of 'all ages over 89'. I will create the new class you suggest, and this class will be parent of the existing classes: HsapDv:0000244 name: tenth decade stage HsapDv:0000245 name: eleventh decade stage
Thank you again!
Anne
@jahilton
DONE, please see https://github.com/obophenotype/developmental-stage-ontologies/blob/develop/src/hsapdv/hsapdv.obo
I hope, this fits your expectations, please let me know Cheers, Anne
[Term] id: HsapDv:0000274 name: 90 year-old and over stage namespace: human_developmental_stage def: "Human stage that refers to an adult who is over 90." [https://github.com/jahilton] is_a: HsapDv:0000000 ! life cycle stage relationship: preceded_by HsapDv:0000243 ! ninth decade stage relationship: part_of HsapDv:0000095 ! 80 year-old and over stage property_value: start_ypb "90.0" xsd:float
Ok we should make a new formal release for this.
done on /develop branch so far, yes
Perfect. TY!
Looks like this didn't make it into the May release Would be wonderful if this term was included in the next release - CELLxGENE schema will finally update HsapDv/MmusDv versions with our next version
PR created https://github.com/obophenotype/developmental-stage-ontologies/pull/96/ Waiting on @matentzn to let me know what is the status of reenabling builds and releases automatically.
Per HIPAA Privacy Rule, age must be removed for individuals over the age of 89. ref: https://privacyruleandresearch.nih.gov/pr_08.asp#:~:text=All%20elements%20of%20dates%20(except,90%20or%20older For some metadata systems, this will result in many individuals classified as "90 or over". Is this enough to support adding a new term that is more accurate to those cases than any existing term?
If so, I would propose the following information for the new term... label: 90 year-old and over human stage description: Aged stage that refers to an adult who is over 90. start, years post birth: 90.0 subclass_of: 'human life cycle stage' part_of: some '80 year-old and over human stage'