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obophenotype / developmental-stage-ontologies

Source files for various species-specific stage ontologies
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Clarify difference between two versions of ZFS #81

Open cmungall opened 2 years ago

cmungall commented 2 years ago

diff between ZFS that is in this repo and ZFS that is distributed with ZFA

[Term]
id: ZFS:0000000 ! Unknown
+xref: ZFIN:ZDB-TERM-100331-2430

[Term]
id: ZFS:0000001 ! Zygote:1-cell
+xref: ZFIN:ZDB-TERM-100331-2431

[Term]
id: ZFS:0000002 ! Cleavage:2-cell
-relationship: immediately_preceded_by ZFS:0000001 ! Zygote:1-cell
-relationship: part_of ZFS:0000046 ! cleavage
+xref: ZFIN:ZDB-TERM-100331-2432

[Term]
id: ZFS:0000003 ! Cleavage:4-cell
-relationship: immediately_preceded_by ZFS:0000002 ! Cleavage:2-cell
-relationship: part_of ZFS:0000046 ! cleavage
+xref: ZFIN:ZDB-TERM-100331-2433

[Term]
id: ZFS:0000004 ! Cleavage:8-cell
-relationship: immediately_preceded_by ZFS:0000003 ! Cleavage:4-cell
-relationship: part_of ZFS:0000046 ! cleavage
+xref: ZFIN:ZDB-TERM-100331-2434

[Term]
id: ZFS:0000005 ! Cleavage:16-cell
-relationship: immediately_preceded_by ZFS:0000004 ! Cleavage:8-cell
-relationship: part_of ZFS:0000046 ! cleavage
+xref: ZFIN:ZDB-TERM-100331-2435

[Term]
id: ZFS:0000006 ! Cleavage:32-cell
-relationship: immediately_preceded_by ZFS:0000005 ! Cleavage:16-cell
-relationship: part_of ZFS:0000046 ! cleavage
+xref: ZFIN:ZDB-TERM-100331-2436

[Term]
id: ZFS:0000007 ! Cleavage:64-cell
-relationship: immediately_preceded_by ZFS:0000006 ! Cleavage:32-cell
-relationship: part_of ZFS:0000046 ! cleavage
+xref: ZFIN:ZDB-TERM-100331-2437

[Term]
id: ZFS:0000008 ! Blastula:128-cell
-relationship: immediately_preceded_by ZFS:0000007 ! Cleavage:64-cell
-relationship: part_of ZFS:0000045 ! blastula
+xref: ZFIN:ZDB-TERM-100331-2438

[Term]
id: ZFS:0000009 ! Blastula:256-cell
-relationship: immediately_preceded_by ZFS:0000008 ! Blastula:128-cell
-relationship: part_of ZFS:0000045 ! blastula
+xref: ZFIN:ZDB-TERM-100331-2439

[Term]
id: ZFS:0000010 ! Blastula:512-cell
-relationship: immediately_preceded_by ZFS:0000009 ! Blastula:256-cell
-relationship: part_of ZFS:0000045 ! blastula
+xref: ZFIN:ZDB-TERM-100331-2440

[Term]
id: ZFS:0000011 ! Blastula:1k-cell
-relationship: immediately_preceded_by ZFS:0000010 ! Blastula:512-cell
-relationship: part_of ZFS:0000045 ! blastula
+xref: ZFIN:ZDB-TERM-100331-2441

[Term]
id: ZFS:0000012 ! Blastula:High
-relationship: immediately_preceded_by ZFS:0000011 ! Blastula:1k-cell
-relationship: part_of ZFS:0000045 ! blastula
+xref: ZFIN:ZDB-TERM-100331-2442

[Term]
id: ZFS:0000013 ! Blastula:Oblong
-relationship: immediately_preceded_by ZFS:0000012 ! Blastula:High
-relationship: part_of ZFS:0000045 ! blastula
+xref: ZFIN:ZDB-TERM-100331-2443

[Term]
id: ZFS:0000014 ! Blastula:Sphere
-relationship: immediately_preceded_by ZFS:0000013 ! Blastula:Oblong
-relationship: part_of ZFS:0000045 ! blastula
+xref: ZFIN:ZDB-TERM-100331-2444

[Term]
id: ZFS:0000015 ! Blastula:Dome
-relationship: immediately_preceded_by ZFS:0000014 ! Blastula:Sphere
-relationship: part_of ZFS:0000045 ! blastula
+xref: ZFIN:ZDB-TERM-100331-2445

[Term]
id: ZFS:0000016 ! Blastula:30%-epiboly
-relationship: immediately_preceded_by ZFS:0000015 ! Blastula:Dome
-relationship: part_of ZFS:0000045 ! blastula
+xref: ZFIN:ZDB-TERM-100331-2446

[Term]
id: ZFS:0000017 ! Gastrula:50%-epiboly
-relationship: immediately_preceded_by ZFS:0000016 ! Blastula:30%-epiboly
-relationship: part_of ZFS:0000047 ! gastrula
+xref: ZFIN:ZDB-TERM-100331-2447

[Term]
id: ZFS:0000018 ! Gastrula:Germ-ring
-relationship: immediately_preceded_by ZFS:0000017 ! Gastrula:50%-epiboly
-relationship: part_of ZFS:0000047 ! gastrula
+xref: ZFIN:ZDB-TERM-100331-2448

[Term]
id: ZFS:0000019 ! Gastrula:Shield
-relationship: immediately_preceded_by ZFS:0000018 ! Gastrula:Germ-ring
-relationship: part_of ZFS:0000047 ! gastrula
+xref: ZFIN:ZDB-TERM-100331-2449

[Term]
id: ZFS:0000020 ! Gastrula:75%-epiboly
-relationship: immediately_preceded_by ZFS:0000019 ! Gastrula:Shield
-relationship: part_of ZFS:0000047 ! gastrula
+xref: ZFIN:ZDB-TERM-100331-2450

[Term]
id: ZFS:0000021 ! Gastrula:90%-epiboly
-relationship: immediately_preceded_by ZFS:0000020 ! Gastrula:75%-epiboly
-relationship: part_of ZFS:0000047 ! gastrula
+xref: ZFIN:ZDB-TERM-100331-2451

[Term]
id: ZFS:0000022 ! Gastrula:Bud
-relationship: immediately_preceded_by ZFS:0000021 ! Gastrula:90%-epiboly
-relationship: part_of ZFS:0000047 ! gastrula
+xref: ZFIN:ZDB-TERM-100331-2452

[Term]
id: ZFS:0000023 ! Segmentation:1-4 somites
-relationship: immediately_preceded_by ZFS:0000022 ! Gastrula:Bud
-relationship: part_of ZFS:0000049 ! segmentation
+xref: ZFIN:ZDB-TERM-100331-2453

[Term]
id: ZFS:0000024 ! Segmentation:5-9 somites
-relationship: immediately_preceded_by ZFS:0000023 ! Segmentation:1-4 somites
-relationship: part_of ZFS:0000049 ! segmentation
+xref: ZFIN:ZDB-TERM-100331-2454

[Term]
id: ZFS:0000025 ! Segmentation:10-13 somites
-relationship: immediately_preceded_by ZFS:0000024 ! Segmentation:5-9 somites
-relationship: part_of ZFS:0000049 ! segmentation
+xref: ZFIN:ZDB-TERM-100331-2455

[Term]
id: ZFS:0000026 ! Segmentation:14-19 somites
-relationship: immediately_preceded_by ZFS:0000025 ! Segmentation:10-13 somites
-relationship: part_of ZFS:0000049 ! segmentation
+xref: ZFIN:ZDB-TERM-100331-2456

[Term]
id: ZFS:0000027 ! Segmentation:20-25 somites
-relationship: immediately_preceded_by ZFS:0000026 ! Segmentation:14-19 somites
-relationship: part_of ZFS:0000049 ! segmentation
+xref: ZFIN:ZDB-TERM-100331-2457

[Term]
id: ZFS:0000028 ! Segmentation:26+ somites
-relationship: immediately_preceded_by ZFS:0000027 ! Segmentation:20-25 somites
-relationship: part_of ZFS:0000049 ! segmentation
+xref: ZFIN:ZDB-TERM-100331-2458

[Term]
id: ZFS:0000029 ! Pharyngula:Prim-5
-relationship: immediately_preceded_by ZFS:0000028 ! Segmentation:26+ somites
-relationship: part_of ZFS:0000050 ! pharyngula
+xref: ZFIN:ZDB-TERM-100331-2439

[Term]
id: ZFS:0000030 ! Pharyngula:Prim-15
-relationship: immediately_preceded_by ZFS:0000029 ! Pharyngula:Prim-5
-relationship: part_of ZFS:0000050 ! pharyngula
+xref: ZFIN:ZDB-TERM-100331-2460

[Term]
id: ZFS:0000031 ! Pharyngula:Prim-25
-relationship: immediately_preceded_by ZFS:0000030 ! Pharyngula:Prim-15
-relationship: part_of ZFS:0000050 ! pharyngula
+xref: ZFIN:ZDB-TERM-100331-2461

[Term]
id: ZFS:0000032 ! Pharyngula:High-pec
-relationship: immediately_preceded_by ZFS:0000031 ! Pharyngula:Prim-25
-relationship: part_of ZFS:0000050 ! pharyngula
+xref: ZFIN:ZDB-TERM-100331-2462

[Term]
id: ZFS:0000033 ! Hatching:Long-pec
-relationship: immediately_preceded_by ZFS:0000032 ! Pharyngula:High-pec
-relationship: part_of ZFS:0007000 ! hatching
+xref: ZFIN:ZDB-TERM-100331-2463

[Term]
id: ZFS:0000034 ! Hatching:Pec-fin
-relationship: immediately_preceded_by ZFS:0000033 ! Hatching:Long-pec
-relationship: part_of ZFS:0007000 ! hatching
+xref: ZFIN:ZDB-TERM-100331-2464

[Term]
id: ZFS:0000035 ! Larval:Protruding-mouth
-relationship: immediately_preceded_by ZFS:0000034 ! Hatching:Pec-fin
-relationship: part_of ZFS:0000048 ! larva
+xref: ZFIN:ZDB-TERM-100331-2465

[Term]
id: ZFS:0000036 ! Larval:Day 4
-relationship: immediately_preceded_by ZFS:0000035 ! Larval:Protruding-mouth
-relationship: part_of ZFS:0000048 ! larva
+xref: ZFIN:ZDB-TERM-100331-2466

[Term]
id: ZFS:0000037 ! Larval:Day 5
-relationship: immediately_preceded_by ZFS:0000036 ! Larval:Day 4
-relationship: part_of ZFS:0000048 ! larva
+xref: ZFIN:ZDB-TERM-100331-2467

[Term]
id: ZFS:0000038 ! Larval:Day 6
-relationship: immediately_preceded_by ZFS:0000037 ! Larval:Day 5
-relationship: part_of ZFS:0000048 ! larva
+xref: ZFIN:ZDB-TERM-100331-2468

[Term]
id: ZFS:0000039 ! Larval:Days 7-13
-relationship: immediately_preceded_by ZFS:0000038 ! Larval:Day 6
-relationship: part_of ZFS:0000048 ! larva
+xref: ZFIN:ZDB-TERM-100331-2469

[Term]
id: ZFS:0000040 ! Larval:Days 14-20
-relationship: immediately_preceded_by ZFS:0000039 ! Larval:Days 7-13
-relationship: part_of ZFS:0000048 ! larva
+xref: ZFIN:ZDB-TERM-100331-2470

[Term]
id: ZFS:0000041 ! Larval:Days 21-29
-relationship: immediately_preceded_by ZFS:0000040 ! Larval:Days 14-20
-relationship: part_of ZFS:0000048 ! larva
+xref: ZFIN:ZDB-TERM-100331-2471

[Term]
id: ZFS:0000042 ! Juvenile:Days 30-44
-relationship: immediately_preceded_by ZFS:0000041 ! Larval:Days 21-29
-relationship: part_of ZFS:0000051 ! juvenile
+xref: ZFIN:ZDB-TERM-100331-2472

[Term]
id: ZFS:0000043 ! Juvenile:Days 45-89
-relationship: immediately_preceded_by ZFS:0000042 ! Juvenile:Days 30-44
-relationship: part_of ZFS:0000051 ! juvenile
+xref: ZFIN:ZDB-TERM-100331-2473

[Term]
id: ZFS:0000044 ! adult --> Adult
-name: adult
-relationship: immediately_preceded_by ZFS:0000043 ! Juvenile:Days 45-89
+name: Adult
+xref: ZFIN:ZDB-TERM-100331-2474

-[Term]
-id: ZFS:0000045 ! blastula
-name: blastula
-is_a: ZFS:0100000 ! zebrafish stage
-relationship: immediately_preceded_by ZFS:0000046 ! cleavage

-[Term]
-id: ZFS:0000046 ! cleavage
-name: cleavage
-is_a: ZFS:0100000 ! zebrafish stage

-[Term]
-id: ZFS:0000047 ! gastrula
-name: gastrula
-is_a: ZFS:0100000 ! zebrafish stage
-relationship: immediately_preceded_by ZFS:0000045 ! blastula

-[Term]
-id: ZFS:0000048 ! larva
-name: larva
-is_a: ZFS:0100000 ! zebrafish stage
-relationship: immediately_preceded_by ZFS:0007000 ! hatching

-[Term]
-id: ZFS:0000049 ! segmentation
-name: segmentation
-is_a: ZFS:0100000 ! zebrafish stage
-relationship: immediately_preceded_by ZFS:0000047 ! gastrula

-[Term]
-id: ZFS:0000050 ! pharyngula
-name: pharyngula
-is_a: ZFS:0100000 ! zebrafish stage
-relationship: immediately_preceded_by ZFS:0000049 ! segmentation

-[Term]
-id: ZFS:0000051 ! juvenile
-name: juvenile
-is_a: ZFS:0100000 ! zebrafish stage
-relationship: immediately_preceded_by ZFS:0000048 ! larva

-[Term]
-id: ZFS:0007000 ! hatching
-name: hatching
-is_a: ZFS:0100000 ! zebrafish stage
-relationship: immediately_preceded_by ZFS:0000050 ! pharyngula
-created_by: yvonne
-creation_date: 2014-11-05T08:33:09Z

[Term]
id: ZFS:0100000 ! zebrafish stage --> Stages
-name: zebrafish stage
+name: Stages

-[Typedef]
-id: immediately_preceded_by ! immediately_preceded_by
-name: immediately_preceded_by
-def: "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" []
-xref: RO:0002087
-is_a: preceded_by ! preceded_by

-[Typedef]
-id: part_of ! part of
-name: part of
-xref: BFO:0000050
-is_transitive: true

-[Typedef]
-id: preceded_by ! preceded_by
-name: preceded_by
-def: "X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)" []
-xref: BFO:0000062
-is_transitive: true
matentzn commented 1 year ago

In here I did something terrible that is obvious to the reviewer: https://github.com/obophenotype/developmental-stage-ontologies/pull/87#pullrequestreview-1572124582

Whatever archeologist will come across this issue should undo this pull request!