obophenotype / dicty-phenotype-ontology

Dicty Phenotype Ontology
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DDPheno update #7

Closed pfey03 closed 4 years ago

pfey03 commented 4 years ago

Added a few new terms, obsoleted two and fixed several some parentage, merged two terms and added synonyms.

matentzn commented 4 years ago

Hey Petra! Great Pull request! If you check the travis job:

https://travis-ci.com/github/obophenotype/dicty-phenotype-ontology/builds/174695829

you can see it complains about some property values with trailing whitespace:

http://purl.obolibrary.org/obo/DDPHENO_0001406,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym,decreased localization of protein to clathrin-coated pits 
http://purl.obolibrary.org/obo/DDPHENO_0000288,http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym, increased defense response to pathogenic Gram-negative bacterium
http://purl.obolibrary.org/obo/DDPHENO_0001215,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym, increased EDTA-sensitive cell-cell adhesion
http://purl.obolibrary.org/obo/DDPHENO_0001407,http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym,increased localization of protein to clathrin-coated pits 
http://purl.obolibrary.org/obo/DDPHENO_0000578,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym, increased DSB repair via nonhomologous end joining
http://purl.obolibrary.org/obo/DDPHENO_0000576,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym, abolished DSB repair via nonhomologous end joining
http://purl.obolibrary.org/obo/DDPHENO_0000577,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym, decreased DSB repair via nonhomologous end joining
http://purl.obolibrary.org/obo/DDPHENO_0001040,http://purl.obolibrary.org/obo/IAO_0000115,"OBSOLETE. Deviation from the normal, usual, or expected events during the response to drug. "

If you want the Travis Quality control to pass, you should get rid of any space characters at the end or the beginning of these indicated values..

matentzn commented 4 years ago

You can also merge this now, and fix it with a second pull request.. Up to you!