obophenotype-user
commented
9 years ago - status: unread --> closed-wont-fix
- assigned_to: Peter N. Robinson
Original comment by: pnrobinson
Closed obophenotype-user closed 8 years ago
obophenotype-user
commented
9 years ago Original comment by: pnrobinson
obophenotype-user
commented
9 years ago I have been searching around for this but do not see any classification of stages within neonatal that seems to represent a community standard. Does Ben Hutton have any particular suggestion?
Original comment by: pnrobinson
obophenotype-user
commented
9 years ago Also we had started to align these with the community stage ontologies, here: https://code.google.com/p/developmental-stage-ontologies/wiki/HsapDv It would be great to know if there is another standard we should be looking at for this.
These community staging ontologies are interoperable with GO and UBERON anatomy, so we we would love some help ensuring that the human staging is appropriate so we can make it interoperable for our reasoning applications. This will be very important for addressing temporality of phenotyping across species.
Original comment by: mellybelly
obophenotype-user
commented
9 years ago Some of the terms are not compatible with the HPO definitions so far (that are based on consensus in the human genetics community), so we need to think about exactly what to do here. The Carnegie stages are great, but they are not really useful in a clinical setting. Also, there are a lot of stages like this: "6-year-old human stage", that are perfectly fine, but there are extremely few phenotypic features that have such a specific onset. This is a difficult topic! -Peter
Dr. med. Peter N. Robinson, MSc. Professor of Medical Genomics Professor in the Bioinformatics Division of the Department of Mathematics and Computer Science of the Freie Universität Berlin Institut für Medizinische Genetik und Humangenetik Charité - Universitätsmedizin Berlin Augustenburger Platz 1 13353 Berlin Germany +4930 450566006 Mobile: 0160 93769872 peter.robinson@charite.de http://compbio.charite.de http://www.human-phenotype-ontology.org Introduction to Bio-Ontologies: http://www.crcpress.com/product/isbn/9781439836651 I have learned from my mistakes, and I am sure I can repeat them exactly ORCID ID:http://orcid.org/0000-0002-0736-9199 Scopus Author ID 7403719646 Appointment request: http://doodle.com/pnrobinson
Von: Melissa Haendel [mellybelly@users.sf.net] Gesendet: Sonntag, 3. Mai 2015 14:49 An: [obo:human-phenotype-requests] Betreff: [obo:human-phenotype-requests] #383 How to describe specific neonatal stages
Also we had started to align these with the community stage ontologies, here: https://code.google.com/p/developmental-stage-ontologies/wiki/HsapDv It would be great to know if there is another standard we should be looking at for this.
These community staging ontologies are interoperable with GO and UBERON anatomy, so we we would love some help ensuring that the human staging is appropriate so we can make it interoperable for our reasoning applications. This will be very important for addressing temporality of phenotyping across species.
[human-phenotype-requests:#383] How to describe specific neonatal stages
Status: closed-wont-fix Group: musculoskeletal Created: Tue Jan 20, 2015 09:22 PM UTC by Chris Mungall Last Updated: Sun May 03, 2015 07:01 AM UTC Owner: Peter N. Robinson
has no children. Are these in scope of HPO?
(request from Ben Hutton)
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Original comment by: pnrobinson
has no children. Are these in scope of HPO?
(request from Ben Hutton)
Reported by: cmungall
Original Ticket: obo/human-phenotype-requests/383