obophenotype-user
commented
13 years ago HP:0001682-Subaortic stenosis HP:0001650-Aortic stenosis MP:0010448-heart left ventricle outflow tract stenosis MP:0006117-aortic valve stenosis ==> The HPO structure was incorrect. A term has been added, "Abnormality of the left ventricular outflow tract" (HP:0011103), and subaortic stenosis has been made a child of that term.
HP:0002414-Spina bifida HP:0010301-Spinal dysraphism MP:0000929-open neural tube MP:0003054-spina bifida ==> I think the HPO is correct here.
HP:0002634-Arteriosclerosis HP:0002621-Atherosclerosis MP:0003991-arteriosclerosis MP:0005338-atherosclerotic lesions => Atherosclerosis is a specific kind of arteriosclerosis, this has been fixed in the HPO.
HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level => HPO is correct here.
HP:0003468-Abnormality of the vertebrae HP:0000925-Abnormality of the vertebral column MP:0000137-abnormal vertebrae morphology MP:0000141-abnormal vertebral body morphology => HPO is correct here.
HP:0004398-Peptic ulcer HP:0002592-Gastric ulcer MP:0003301-peptic ulcer MP:0003282-gastric ulcer => Gastric ulcer is a specific type of peptic ulcer. This has been fixed in the HPO
The following are just inversions of the above. MP:0000141-abnormal vertebral body morphology MP:0000137-abnormal vertebrae morphology HP:0000925-Abnormality of the vertebral column HP:0003468-Abnormality of the vertebrae MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA MP:0003054-spina bifida MP:0000929-open neural tube HP:0010301-Spinal dysraphism HP:0002414-Spina bifida MP:0003282-gastric ulcer MP:0003301-peptic ulcer HP:0002592-Gastric ulcer HP:0004398-Peptic ulcer MP:0005338-atherosclerotic lesions MP:0003991-arteriosclerosis HP:0002621-Atherosclerosis HP:0002634-Arteriosclerosis MP:0006117-aortic valve stenosis MP:0010448-heart left ventricle outflow tract stenosis HP:0001650-Aortic stenosis HP:0001682-Subaortic stenosis
Original comment by: pnrobinson
there are 12 inversions between HP and MP, based on synonym matching. Consider either changing synonyms or the isa hierarchy
Cols:
A B XA XB
Criteria:
A has best match by synonyms to XA B has best match by synonyms to XB A SubClassOf B XA HasSubClass XB
HP:0001682-Subaortic stenosis HP:0001650-Aortic stenosis MP:0010448-heart left ventricle outflow tract stenosis MP:0006117-aortic valve stenosis HP:0002414-Spina bifida HP:0010301-Spinal dysraphism MP:0000929-open neural tube MP:0003054-spina bifida HP:0002634-Arteriosclerosis HP:0002621-Atherosclerosis MP:0003991-arteriosclerosis MP:0005338-atherosclerotic lesions HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level HP:0003468-Abnormality of the vertebrae HP:0000925-Abnormality of the vertebral column MP:0000137-abnormal vertebrae morphology MP:0000141-abnormal vertebral body morphology HP:0004398-Peptic ulcer HP:0002592-Gastric ulcer MP:0003301-peptic ulcer MP:0003282-gastric ulcer MP:0000141-abnormal vertebral body morphology MP:0000137-abnormal vertebrae morphology HP:0000925-Abnormality of the vertebral column HP:0003468-Abnormality of the vertebrae MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA MP:0003054-spina bifida MP:0000929-open neural tube HP:0010301-Spinal dysraphism HP:0002414-Spina bifida MP:0003282-gastric ulcer MP:0003301-peptic ulcer HP:0002592-Gastric ulcer HP:0004398-Peptic ulcer MP:0005338-atherosclerotic lesions MP:0003991-arteriosclerosis HP:0002621-Atherosclerosis HP:0002634-Arteriosclerosis MP:0006117-aortic valve stenosis MP:0010448-heart left ventricle outflow tract stenosis HP:0001650-Aortic stenosis HP:0001682-Subaortic stenosis
Here is the full report showing the nornalized synonym label that is matched:
x HP:0001682-Subaortic stenosis HP:0001650-Aortic stenosis MP:0010448-heart left ventricle outflow tract stenosis MP:0006117-aortic valve stenosis stenosisubaort abnormaorticstenosivalv x HP:0001682-Subaortic stenosis HP:0001650-Aortic stenosis MP:0010448-heart left ventricle outflow tract stenosis MP:0006117-aortic valve stenosis stenosisubaort aorticstenosi x HP:0001682-Subaortic stenosis HP:0001650-Aortic stenosis MP:0010448-heart left ventricle outflow tract stenosis MP:0006117-aortic valve stenosis stenosisubaort aorticstenosivalv x HP:0002414-Spina bifida HP:0010301-Spinal dysraphism MP:0000929-open neural tube MP:0003054-spina bifida bifidadefectneuralspinatube dysraphspinal x HP:0002414-Spina bifida HP:0010301-Spinal dysraphism MP:0000929-open neural tube MP:0003054-spina bifida bifidaspina dysraphspinal x HP:0002634-Arteriosclerosis HP:0002621-Atherosclerosis MP:0003991-arteriosclerosis MP:0005338-atherosclerotic lesions abnormarteriosclerosivasculatur atherosclerosi x HP:0002634-Arteriosclerosis HP:0002621-Atherosclerosis MP:0003991-arteriosclerosis MP:0005338-atherosclerotic lesions arteriosclerosi atherosclerosi x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormconcentrdecreasimmunoglobulin abnormconcentrhypogammaglobulinemiaimmunoglobulin x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormconcentrdecreasimmunoglobulin abnormconcentrhypogammaglobulinemiaimmunoglobulinserum x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormconcentrdecreasimmunoglobulin abnormhypogammaglobulinemiaimmunoglobulinlevel x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormconcentrdecreasimmunoglobulin abnormhypogammaglobulinemiaimmunoglobulinlevelserum x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormconcentrdecreasimmunoglobulin hypogammaglobulinemia x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormconcentrdecreasimmunoglobulinserum abnormconcentrhypogammaglobulinemiaimmunoglobulin x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormconcentrdecreasimmunoglobulinserum abnormconcentrhypogammaglobulinemiaimmunoglobulinserum x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormconcentrdecreasimmunoglobulinserum abnormhypogammaglobulinemiaimmunoglobulinlevel x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormconcentrdecreasimmunoglobulinserum abnormhypogammaglobulinemiaimmunoglobulinlevelserum x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormconcentrdecreasimmunoglobulinserum hypogammaglobulinemia x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormdecreasimmunoglobulinlevel abnormconcentrhypogammaglobulinemiaimmunoglobulin x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormdecreasimmunoglobulinlevel abnormconcentrhypogammaglobulinemiaimmunoglobulinserum x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormdecreasimmunoglobulinlevel abnormhypogammaglobulinemiaimmunoglobulinlevel x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormdecreasimmunoglobulinlevel abnormhypogammaglobulinemiaimmunoglobulinlevelserum x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormdecreasimmunoglobulinlevel hypogammaglobulinemia x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormdecreasimmunoglobulinlevelserum abnormconcentrhypogammaglobulinemiaimmunoglobulin x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormdecreasimmunoglobulinlevelserum abnormconcentrhypogammaglobulinemiaimmunoglobulinserum x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormdecreasimmunoglobulinlevelserum abnormhypogammaglobulinemiaimmunoglobulinlevel x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormdecreasimmunoglobulinlevelserum abnormhypogammaglobulinemiaimmunoglobulinlevelserum x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level abnormdecreasimmunoglobulinlevelserum hypogammaglobulinemia x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level decreasimmunoglobulinlevel abnormconcentrhypogammaglobulinemiaimmunoglobulin x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level decreasimmunoglobulinlevel abnormconcentrhypogammaglobulinemiaimmunoglobulinserum x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level decreasimmunoglobulinlevel abnormhypogammaglobulinemiaimmunoglobulinlevel x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level decreasimmunoglobulinlevel abnormhypogammaglobulinemiaimmunoglobulinlevelserum x HP:0002720-Decreased IgA HP:0004313-Hypogammaglobulinemia MP:0002460-decreased immunoglobulin level MP:0001805-decreased IgG level decreasimmunoglobulinlevel hypogammaglobulinemia x HP:0003468-Abnormality of the vertebrae HP:0000925-Abnormality of the vertebral column MP:0000137-abnormal vertebrae morphology MP:0000141-abnormal vertebral body morphology abnormcolumnvertebrvertebra abnormbodivertebr x HP:0003468-Abnormality of the vertebrae HP:0000925-Abnormality of the vertebral column MP:0000137-abnormal vertebrae morphology MP:0000141-abnormal vertebral body morphology abnormvertebra abnormbodivertebr x HP:0004398-Peptic ulcer HP:0002592-Gastric ulcer MP:0003301-peptic ulcer MP:0003282-gastric ulcer pepticulcer abnormgastricstomachulcer x HP:0004398-Peptic ulcer HP:0002592-Gastric ulcer MP:0003301-peptic ulcer MP:0003282-gastric ulcer pepticulcer gastriculcer x MP:0000141-abnormal vertebral body morphology MP:0000137-abnormal vertebrae morphology HP:0000925-Abnormality of the vertebral column HP:0003468-Abnormality of the vertebrae abnormbodivertebr abnormcolumnvertebrvertebra x MP:0000141-abnormal vertebral body morphology MP:0000137-abnormal vertebrae morphology HP:0000925-Abnormality of the vertebral column HP:0003468-Abnormality of the vertebrae abnormbodivertebr abnormvertebra x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormconcentrhypogammaglobulinemiaimmunoglobulin abnormconcentrdecreasimmunoglobulin x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormconcentrhypogammaglobulinemiaimmunoglobulin abnormconcentrdecreasimmunoglobulinserum x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormconcentrhypogammaglobulinemiaimmunoglobulin abnormdecreasimmunoglobulinlevel x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormconcentrhypogammaglobulinemiaimmunoglobulin abnormdecreasimmunoglobulinlevelserum x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormconcentrhypogammaglobulinemiaimmunoglobulin decreasimmunoglobulinlevel x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormconcentrhypogammaglobulinemiaimmunoglobulinserum abnormconcentrdecreasimmunoglobulin x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormconcentrhypogammaglobulinemiaimmunoglobulinserum abnormconcentrdecreasimmunoglobulinserum x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormconcentrhypogammaglobulinemiaimmunoglobulinserum abnormdecreasimmunoglobulinlevel x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormconcentrhypogammaglobulinemiaimmunoglobulinserum abnormdecreasimmunoglobulinlevelserum x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormconcentrhypogammaglobulinemiaimmunoglobulinserum decreasimmunoglobulinlevel x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormhypogammaglobulinemiaimmunoglobulinlevel abnormconcentrdecreasimmunoglobulin x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormhypogammaglobulinemiaimmunoglobulinlevel abnormconcentrdecreasimmunoglobulinserum x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormhypogammaglobulinemiaimmunoglobulinlevel abnormdecreasimmunoglobulinlevel x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormhypogammaglobulinemiaimmunoglobulinlevel abnormdecreasimmunoglobulinlevelserum x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormhypogammaglobulinemiaimmunoglobulinlevel decreasimmunoglobulinlevel x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormhypogammaglobulinemiaimmunoglobulinlevelserum abnormconcentrdecreasimmunoglobulin x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormhypogammaglobulinemiaimmunoglobulinlevelserum abnormconcentrdecreasimmunoglobulinserum x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormhypogammaglobulinemiaimmunoglobulinlevelserum abnormdecreasimmunoglobulinlevel x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormhypogammaglobulinemiaimmunoglobulinlevelserum abnormdecreasimmunoglobulinlevelserum x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA abnormhypogammaglobulinemiaimmunoglobulinlevelserum decreasimmunoglobulinlevel x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA hypogammaglobulinemia abnormconcentrdecreasimmunoglobulin x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA hypogammaglobulinemia abnormconcentrdecreasimmunoglobulinserum x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA hypogammaglobulinemia abnormdecreasimmunoglobulinlevel x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA hypogammaglobulinemia abnormdecreasimmunoglobulinlevelserum x MP:0001805-decreased IgG level MP:0002460-decreased immunoglobulin level HP:0004313-Hypogammaglobulinemia HP:0002720-Decreased IgA hypogammaglobulinemia decreasimmunoglobulinlevel x MP:0003054-spina bifida MP:0000929-open neural tube HP:0010301-Spinal dysraphism HP:0002414-Spina bifida dysraphspinal bifidadefectneuralspinatube x MP:0003054-spina bifida MP:0000929-open neural tube HP:0010301-Spinal dysraphism HP:0002414-Spina bifida dysraphspinal bifidaspina x MP:0003282-gastric ulcer MP:0003301-peptic ulcer HP:0002592-Gastric ulcer HP:0004398-Peptic ulcer abnormgastricstomachulcer pepticulcer x MP:0003282-gastric ulcer MP:0003301-peptic ulcer HP:0002592-Gastric ulcer HP:0004398-Peptic ulcer gastriculcer pepticulcer x MP:0005338-atherosclerotic lesions MP:0003991-arteriosclerosis HP:0002621-Atherosclerosis HP:0002634-Arteriosclerosis atherosclerosi abnormarteriosclerosivasculatur x MP:0005338-atherosclerotic lesions MP:0003991-arteriosclerosis HP:0002621-Atherosclerosis HP:0002634-Arteriosclerosis atherosclerosi arteriosclerosi x MP:0006117-aortic valve stenosis MP:0010448-heart left ventricle outflow tract stenosis HP:0001650-Aortic stenosis HP:0001682-Subaortic stenosis abnormaorticstenosivalv stenosisubaort x MP:0006117-aortic valve stenosis MP:0010448-heart left ventricle outflow tract stenosis HP:0001650-Aortic stenosis HP:0001682-Subaortic stenosis aorticstenosi stenosisubaort x MP:0006117-aortic valve stenosis MP:0010448-heart left ventricle outflow tract stenosis HP:0001650-Aortic stenosis HP:0001682-Subaortic stenosis aorticstenosivalv stenosisubaort
Reported by: *anonymous
Original Ticket: obo/human-phenotype-requests/47