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Ontology for the description of human clinical features
http://obophenotype.github.io/human-phenotype-ontology/
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Many new terms for specific neoplasms #472

Closed obophenotype-user closed 9 years ago

obophenotype-user commented 9 years ago

Hi Peter, We want to add more malignant and benign neoplasms to the ontology. Based on the Concise Handbook Familial Cancer Susceptibility Syndromes (2008), I've compiled a list (attached) of missing HPO terms that we'd like to request, along with some synonyms and definitions.

Thanks, Courtney

Added terms for choroid plexus carcinoma endolymphatic sac tumor APUDOMA Fallopian tube carcinoma

Others will follow

Reported by: courtneyhum

Original Ticket: obo/human-phenotype-requests/472

obophenotype-user commented 9 years ago

Diff:


--- old
+++ new
@@ -3,3 +3,12 @@

 Thanks,
 Courtney
+
+Added terms for 
+choroid plexus carcinoma
+endolymphatic sac tumor
+APUDOMA
+Fallopian tube carcinoma
+
+
+Others will follow

Original comment by: pnrobinson

obophenotype-user commented 9 years ago

Original comment by: pnrobinson

obophenotype-user commented 9 years ago

Added nearly all of the requested terms and reordered a few parts of the relvant subhierarchies. Thanks for the suggestions!

Original comment by: pnrobinson

obophenotype-user commented 9 years ago

Thanks Peter,

Are the others going to be added or did you feel they weren't proper terms?

Courtney

On Mon, Jun 22, 2015 at 4:42 PM, Peter N. Robinson probins@users.sf.net wrote:

  • status: pending --> closed-accepted
  • Comment:

Added nearly all of the requested terms and reordered a few parts of the

relvant subhierarchies. Thanks for the suggestions!

Status: closed-accepted Group: hierarchy Created: Thu Jun 04, 2015 09:13 PM UTC by Courtney Hum Last Updated: Wed Jun 10, 2015 08:21 PM UTC Owner: Peter N. Robinson

Hi Peter, We want to add more malignant and benign neoplasms to the ontology. Based on the Concise Handbook Familial Cancer Susceptibility Syndromes (2008), I've compiled a list (attached) of missing HPO terms that we'd like to request, along with some synonyms and definitions.

Thanks, Courtney

Added terms for choroid plexus carcinoma endolymphatic sac tumor APUDOMA Fallopian tube carcinoma

Others will follow

Sent from sourceforge.net because you indicated interest in https://sourceforge.net/p/obo/human-phenotype-requests/472/

To unsubscribe from further messages, please visit https://sourceforge.net/auth/subscriptions/

Courtney Hum Genetic Counsellor

PhenomeCentral Support Team

Original comment by: courtneyhum

obophenotype-user commented 9 years ago

Dear Courtney, I am going to continue with your second term request shortly. There were a few items where I wasn't sure if they were the preferred clinical terminology and or there was already a synonym in the HPO. I will try to distill these down into a new term request so we do not lose track of them while I am working on the extended set. Thanks for the input! -Peter

Dr. med. Peter N. Robinson, MSc. Professor of Medical Genomics Professor in the Bioinformatics Division of the Department of Mathematics and Computer Science of the Freie Universität Berlin Institut für Medizinische Genetik und Humangenetik Charité - Universitätsmedizin Berlin Augustenburger Platz 1 13353 Berlin Germany +4930 450566006 Mobile: 0160 93769872 peter.robinson@charite.de http://compbio.charite.de http://www.human-phenotype-ontology.org Introduction to Bio-Ontologies: http://www.crcpress.com/product/isbn/9781439836651 I have learned from my mistakes, and I am sure I can repeat them exactly ORCID ID:http://orcid.org/0000-0002-0736-9199 Scopus Author ID 7403719646 Appointment request: http://doodle.com/pnrobinson

Von: Courtney Hum [courtneyhum@users.sf.net] Gesendet: Montag, 22. Juni 2015 23:00 An: [obo:human-phenotype-requests] Betreff: [obo:human-phenotype-requests] Re: #472 Many new terms for specific neoplasms

Thanks Peter,

Are the others going to be added or did you feel they weren't proper terms?

Courtney

On Mon, Jun 22, 2015 at 4:42 PM, Peter N. Robinson probins@users.sf.netmailto:probins@users.sf.net wrote:

Added nearly all of the requested terms and reordered a few parts of the relvant subhierarchies. Thanks for the suggestions!

Status: closed-accepted Group: hierarchy Created: Thu Jun 04, 2015 09:13 PM UTC by Courtney Hum Last Updated: Wed Jun 10, 2015 08:21 PM UTC Owner: Peter N. Robinson

Hi Peter, We want to add more malignant and benign neoplasms to the ontology. Based on the Concise Handbook Familial Cancer Susceptibility Syndromes (2008), I've compiled a list (attached) of missing HPO terms that we'd like to request, along with some synonyms and definitions.

Thanks, Courtney

Added terms for choroid plexus carcinoma endolymphatic sac tumor APUDOMA Fallopian tube carcinoma

Others will follow

Sent from sourceforge.net because you indicated interest in https://sourceforge.net/p/obo/human-phenotype-requests/472/https://sourceforge.net/p/obo/human-phenotype-requests/472

To unsubscribe from further messages, please visit https://sourceforge.net/auth/subscriptions/https://sourceforge.net/auth/subscriptions

Courtney Hum Genetic Counsellor

PhenomeCentral Support Team

[human-phenotype-requests:#472]http://sourceforge.net/p/obo/human-phenotype-requests/472 Many new terms for specific neoplasms

Status: closed-accepted Group: hierarchy Created: Thu Jun 04, 2015 09:13 PM UTC by Courtney Hum Last Updated: Mon Jun 22, 2015 08:42 PM UTC Owner: Peter N. Robinson

Hi Peter, We want to add more malignant and benign neoplasms to the ontology. Based on the Concise Handbook Familial Cancer Susceptibility Syndromes (2008), I've compiled a list (attached) of missing HPO terms that we'd like to request, along with some synonyms and definitions.

Thanks, Courtney

Added terms for choroid plexus carcinoma endolymphatic sac tumor APUDOMA Fallopian tube carcinoma

Others will follow

Sent from sourceforge.net because you indicated interest in https://sourceforge.net/p/obo/human-phenotype-requests/472/https://sourceforge.net/p/obo/human-phenotype-requests/472

To unsubscribe from further messages, please visit https://sourceforge.net/auth/subscriptions/https://sourceforge.net/auth/subscriptions

Original comment by: pnrobinson

obophenotype-user commented 9 years ago

Dear Peter,

I appreciate all the help. If there is anything I can do in the future, or for this current list, to make the process of adding new terms easier or clearer I'd be happy to oblige. I work with Mike Brudno's team on PhenoTips and PhenomeCentral, so I'm sure there will be more term requests in the future.

Take care,

Courtney

On Tue, Jun 23, 2015 at 1:38 AM, Peter N. Robinson probins@users.sf.net wrote:

Dear Courtney, I am going to continue with your second term request shortly. There were a few items where I wasn't sure if they were the preferred clinical terminology and or there was already a synonym in the HPO. I will try to distill these down into a new term request so we do not lose track of them while I am working on the extended set. Thanks for the input! -Peter

Dr. med. Peter N. Robinson, MSc. Professor of Medical Genomics Professor in the Bioinformatics Division of the Department of Mathematics and Computer Science of the Freie Universität Berlin Institut für Medizinische Genetik und Humangenetik Charité - Universitätsmedizin Berlin Augustenburger Platz 1 13353 Berlin Germany +4930 450566006 Mobile: 0160 93769872 peter.robinson@charite.de http://compbio.charite.de http://www.human-phenotype-ontology.org Introduction to Bio-Ontologies: http://www.crcpress.com/product/isbn/9781439836651 I have learned from my mistakes, and I am sure I can repeat them exactly ORCID ID:http://orcid.org/0000-0002-0736-9199 Scopus Author ID 7403719646

Appointment request: http://doodle.com/pnrobinson

Von: Courtney Hum [courtneyhum@users.sf.net] Gesendet: Montag, 22. Juni 2015 23:00 An: [obo:human-phenotype-requests] Betreff: [obo:human-phenotype-requests] Re: #472 Many new terms for specific neoplasms

Thanks Peter,

Are the others going to be added or did you feel they weren't proper terms?

Courtney

On Mon, Jun 22, 2015 at 4:42 PM, Peter N. Robinson probins@users.sf.net probins@users.sf.net wrote:

  • status: pending --> closed-accepted
  • Comment:

Added nearly all of the requested terms and reordered a few parts of the

relvant subhierarchies. Thanks for the suggestions!

Status: closed-accepted Group: hierarchy Created: Thu Jun 04, 2015 09:13 PM UTC by Courtney Hum Last Updated: Wed Jun 10, 2015 08:21 PM UTC Owner: Peter N. Robinson

Hi Peter, We want to add more malignant and benign neoplasms to the ontology. Based on the Concise Handbook Familial Cancer Susceptibility Syndromes (2008), I've compiled a list (attached) of missing HPO terms that we'd like to request, along with some synonyms and definitions.

Thanks, Courtney

Added terms for choroid plexus carcinoma endolymphatic sac tumor APUDOMA Fallopian tube carcinoma

Others will follow

Sent from sourceforge.net because you indicated interest in https://sourceforge.net/p/obo/human-phenotype-requests/472/ https://sourceforge.net/p/obo/human-phenotype-requests/472

To unsubscribe from further messages, please visit https://sourceforge.net/auth/subscriptions/ https://sourceforge.net/auth/subscriptions

Courtney Hum Genetic Counsellor

PhenomeCentral Support Team

[human-phenotype-requests:#472] http://sourceforge.net/p/obo/human-phenotype-requests/472 http://sourceforge.net/p/obo/human-phenotype-requests/472 Many new terms for specific neoplasms

Status: closed-accepted Group: hierarchy Created: Thu Jun 04, 2015 09:13 PM UTC by Courtney Hum Last Updated: Mon Jun 22, 2015 08:42 PM UTC Owner: Peter N. Robinson

Hi Peter, We want to add more malignant and benign neoplasms to the ontology. Based on the Concise Handbook Familial Cancer Susceptibility Syndromes (2008), I've compiled a list (attached) of missing HPO terms that we'd like to request, along with some synonyms and definitions.

Thanks, Courtney

Added terms for choroid plexus carcinoma endolymphatic sac tumor APUDOMA Fallopian tube carcinoma

Others will follow

Sent from sourceforge.net because you indicated interest in https://sourceforge.net/p/obo/human-phenotype-requests/472/ https://sourceforge.net/p/obo/human-phenotype-requests/472

To unsubscribe from further messages, please visit https://sourceforge.net/auth/subscriptions/

https://sourceforge.net/auth/subscriptions

Status: closed-accepted Group: hierarchy Created: Thu Jun 04, 2015 09:13 PM UTC by Courtney Hum Last Updated: Mon Jun 22, 2015 08:42 PM UTC Owner: Peter N. Robinson

Hi Peter, We want to add more malignant and benign neoplasms to the ontology. Based on the Concise Handbook Familial Cancer Susceptibility Syndromes (2008), I've compiled a list (attached) of missing HPO terms that we'd like to request, along with some synonyms and definitions.

Thanks, Courtney

Added terms for choroid plexus carcinoma endolymphatic sac tumor APUDOMA Fallopian tube carcinoma

Others will follow

Sent from sourceforge.net because you indicated interest in https://sourceforge.net/p/obo/human-phenotype-requests/472/

To unsubscribe from further messages, please visit https://sourceforge.net/auth/subscriptions/

Courtney Hum Genetic Counsellor

PhenomeCentral Support Team

Original comment by: courtneyhum