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obophenotype / human-phenotype-ontology

Ontology for the description of human clinical features
http://obophenotype.github.io/human-phenotype-ontology/
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Add British English spellings to HPO term aliases #5103

Closed kkrysiak closed 4 years ago

kkrysiak commented 4 years ago

It would be useful for searching when using aliases that support British English. There are a few examples but there are likely more.

HPO term

Synonym to be added Pediatric == Paediatric Hematopoietic == Haematopoietic Estrogen == Oestrogen Fiber == Fibre Behavoir == Behaviour

broad/exact/narrow/plural/abbreviation ?

kkrysiak commented 4 years ago

A few more

tumor == tumour edema == oedema etiology == aetiology anemia == anaemia hemoglobin == haemoglobin

nicolevasilevsky commented 4 years ago

@pnrobinson I'm happy to help work on adding these. Should we add them as exact synonyms? Should we tag them in some way as British spelling?

pnrobinson commented 4 years ago

Um, we actually already have 100s of UK synonyms. I have added them ad hoc. There is a synonym type for UK spelling. @nicolevasilevsky -- it would be great if you could work on this. I guess it would mean searching for typical US spellings and adding UK synonyms if that made sense. @kkrysiak It is already possible to search for UK spellings (try tumour at https://hpo.jax.org/app/). Possilby Nico has a way of doing this automagically? @matentzn

nicolevasilevsky commented 4 years ago

Yep, that makes sense, I can work on this, unless @matentzn has a way to do it automagically (I love that word.) I'll add this to my meeting agenda to discuss with Nico.

LCCarmody commented 4 years ago

I can help if there is no automagic

kkrysiak commented 4 years ago

@pnrobinson, this came up for us because of pediatric. I did see some but wanted to request any additional support. I really appreciate your rapid response. This has come up in our resource as we utilize the HPO and related aliases. It's great. I was trying to pull examples to provide that we come across relating to our resource (civicdb.org) but I didn't exhaustively search the recommended terms.

nicolevasilevsky commented 4 years ago

Note- @matentzn will write a script to take care of this, and keep it up to date.

Here is a list of terms, to which we will add UK spelling synonyms.

Please add any additional terms to this list if needed (or send terms to me and I will add them)

pnrobinson commented 4 years ago

@kkrysiak We were able to add an additional 400 or so UK synonyms thanks to @matentzn and they should now all have the synonym_type UK spelling tag. Please let us know if anything is missing!

kkrysiak commented 4 years ago

@pnrobinson this is wonderful news and such a fast response. This is greatly appreciated and I think it will aid not only our resource but other groups utilizing HPO for NLP efforts and other associations. Thank you so much.