Open dosumis opened 8 years ago
http://insectbraindb.org/api/v1/brain_region/
How does this look to you? One issue is that the id for neuropil and subregion are not applicable to this list. (ex. http://insectbraindb.org/api/v1/neuropil/:id ) They are separate models and this list simply extends the supercategory list. I could create hyperlinks rather than flattening out the structure... Perhaps I need a URI like http://insectbraindb.org/neuropil/:id or a random string.
Don't seem to have access.
should work now.
Thanks. Hierarchy looks good. Easy enough to script a partonomy from this. Will try to work on it later this week.
Re IDs: as you are already using NIN internally for species-specific terms, perhaps we should just go with INO_nnnnnnnn for the species-generic terms? Are there already pages on your site for the species generic neuropils? If so, what IDs (if any) can be used to resolve them?
The NIN numbers refer only to neurons entries. The neuropils are all species generic (ex. http://insectbraindb.org/api/v1/supercategory/1/ or http://insectbraindb.org/api/v1/subregion/2/ ) The schematic models point to these generic models and a species, but are only used to build the 2-D diagrams.
Mapping table generation partly done. Still need to map to FBbt. Plan to do this by pulling BrainName subset and then matching on stripped down abbreviations. Not all will match.
Plan is for @cmungall to use the resulting mapping table to generate terms with Uberon IDs in this ontology: https://github.com/obophenotype/insect-anatomy-ontology
Should these all be SubClass neuropil? I note that CA in FBbt is a subClassOf neuropil domain
Should these all be SubClass neuropil? I note that CA in FBbt is a subClassOf neuropil domain
We could have 'synaptic neuropil block', 'SN domain and 'SN subdomain' following FBbt. These approximately correspond to BrainName levels 1, 2 and 3. They are not (yet) in the mapping table.