obophenotype / mouse-anatomy-ontology

Ontologies for mouse anatomy and development
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Dorsal/Ventral Striatum #35

Closed cmungall closed 9 years ago

cmungall commented 14 years ago

I'm putting this in as a synonym request although it might be better categorized as a new term request. Not being an anatomist, I'm not sure. I am curating anatomy terms for GEO records and have come across samples that list the source as either dorsal striatum or ventral striatum. These would obviously be parts of striatum. But whether they would be synonyms to existing child terms of striatum, or fall between striatum and its existing children (or not be considered valid terms at all), I'm not sure.

Original comment by: jr_smith

Original Ticket: obo/mouse-anatomy-requests/19

cmungall commented 14 years ago

Original comment by: tfhayamizu

cmungall commented 14 years ago

Another somewhat complicated issue (see attached notes), but I think that there is a reasonable approach.

The plan is to add two new terms: dorsal striatum and ventral striatum, both as part-of striatum.

Caudate-putamen will be part-of dorsal striatum; accumbens nucleus and lentiform nucleus will be part-of ventral striatum.

I will ocnsider adding "olfactory tubercle" and/or "islands of Calleja" as a (part-of) child of ventral striatum.

Original comment by: tfhayamizu

cmungall commented 14 years ago

Original comment by: tfhayamizu

cmungall commented 14 years ago

notes on dorsal/ventral striatum

Original comment by: tfhayamizu

cmungall commented 14 years ago

Added two new terms: dorsal striatum and ventral striatum, both as part-of striatum. Also moved caudate-putamen to part-of dorsal striatum; and moved accumbens nucleus and lentiform nucleus to part-of ventral striatum.

Original comment by: tfhayamizu

cmungall commented 14 years ago

Original comment by: tfhayamizu