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obophenotype / ncbitaxon

Build for NCBITaxon
BSD 3-Clause "New" or "Revised" License
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authority missing from taxa #6

Open cmungall opened 8 years ago

cmungall commented 8 years ago

From @MariaALaporte

Seems to be failing when there is >1 authority per taxon?

Examples http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=16&lvl=3&lin=f&keep=1&srchmode=1&unlock -> Worked, the authority is present in the ncbitaxon.owl file http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=36746&lvl=3&p=mapview&p=has_linkout&p=blast_url&p=genome_blast&lin=f&keep=1&srchmode=1&unlock -> Didn’t work, the authorities are not in the ncbitaxon.owl file

cmungall commented 8 years ago

I'll first check this isn't a synchrony issue - the OWL may be lagging behind the database

cmungall commented 8 years ago

Confirmed - must be either missing in the source file or a problem in conversion. SOurce here: https://github.com/owlcollab/owltools/blob/master/OWLTools-NCBI/src/main/java/owltools/ncbi/NCBI2OWL.java