search

obophenotype / ncbitaxon

Build for NCBITaxon
BSD 3-Clause "New" or "Revised" License
24 stars 7 forks source link

taxslim disjoint file has taxslim IRI #76

Closed balhoff closed 1 year ago

balhoff commented 1 year ago

When you download the taxslim disjoints file from http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim-disjoint-over-in-taxon.owl, that ontology has IRI http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl (and corresponding version IRI).

So you can't load the disjoints file into the same ontology manager as the taxslim file.

balhoff commented 1 year ago

I guess it's the combination of these two lines: https://github.com/obophenotype/ncbitaxon/blob/26bbfaecac44d8a338909d64668cbfbc58f7ddb4/subsets/Makefile#L17-L18

anitacaron commented 1 year ago

The issue is in the owltools command. Adding the parameter --output adds the version IRI. I removed it, and now it works as expected.