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obophenotype / obsolete-hdo

New repository for managing the source for the human disease ontology
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add has_symptom #4

Closed cmungall closed 10 years ago

cmungall commented 10 years ago

to HPO

lschriml commented 10 years ago

Hello Chris, This relation is for links to the Symptom ontology Cheers, Lynn

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On Apr 11, 2014, at 11:44 PM, Chris Mungall notifications@github.com wrote:

to HPO

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cmungall commented 10 years ago

Is there a reason not to use HP here?

On 14 Apr 2014, at 4:20, lschriml wrote:

Hello Chris, This relation is for links to the Symptom ontology Cheers, Lynn

Sent from my iPhone

On Apr 11, 2014, at 11:44 PM, Chris Mungall notifications@github.com wrote:

to HPO

— Reply to this email directly or view it on GitHub.

Reply to this email directly or view it on GitHub: https://github.com/obophenotype/human-disease-ontology/issues/4#issuecomment-40355667

lschriml commented 10 years ago

The concept of a phenotype in HPO and a symptom in DO and SYMP are different and distinctive. We are reporting clinical symptoms. Examples: fatigue, pain, nausea, blurred vision.

SYMP and HPO do have a few terms that overlap. I would like to link to HPO for phenotypic abnormalities, for skeletal and genetic diseases. This makes sense for diseases where there is the genotype - phenotype relationship.

However, in DO we are reporting the common symptoms reported by patients for each disease, and we define symptom as A perceived change in function, sensation or appearance reported by a patient indicative of a disease

Cheers, Lynn

Sent from my iPhone

On Apr 14, 2014, at 10:38 AM, Chris Mungall notifications@github.com wrote:

Is there a reason not to use HP here?

On 14 Apr 2014, at 4:20, lschriml wrote:

Hello Chris, This relation is for links to the Symptom ontology Cheers, Lynn

Sent from my iPhone

On Apr 11, 2014, at 11:44 PM, Chris Mungall notifications@github.com wrote:

to HPO

— Reply to this email directly or view it on GitHub.

Reply to this email directly or view it on GitHub: https://github.com/obophenotype/human-disease-ontology/issues/4#issuecomment-40355667 — Reply to this email directly or view it on GitHub.