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obophenotype / provisional_cell_ontology

Draft cell type definitions from data - candidates for inclusion in CL
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GO terms falling into owl:Nothing #13

Open shawntanzk opened 2 years ago

shawntanzk commented 2 years ago

Screenshot 2021-12-08 at 16 20 05

seems to be from "tube lumen cavitation" & "formation of anatomical boundary"

these issues do not exist in BDSO - so not sure why it is coming in here

shawntanzk commented 2 years ago

only appear when preparing new release - might be the way new ODK imports things in? will try a test release branch with IMP=false and see if it is import issues

shawntanzk commented 2 years ago

If IMP=fasle, it seems fine though, so it has something to do with the way the new ODK imports GO I guess

shawntanzk commented 2 years ago

Have tried with old and new ODK - issue happens with IMP=true either way, therefore it probably is a GO issue - might need help on this @dosumis

shawntanzk commented 2 years ago

For ease, I have published a branch with GO imported so you can open that in protege and check why there is unsatisfiables https://github.com/obophenotype/provisional_cell_ontology/tree/GO-issue

shawntanzk commented 2 years ago

example of reason: Screenshot 2021-12-08 at 18 04 08

balhoff commented 2 years ago

@shawntanzk I just saw that one yesterday! The problem is that we (GO) have not been testing with ELK 0.5. We have lots of issues to fix: https://github.com/geneontology/go-ontology/issues/16524

I'm trying to make progress on that.