Closed shawntanzk closed 2 years ago
annotate --ontology-iri http://purl.obolibrary.org/obo/pcl/imports/go_import.owl annotate -V http://purl.obolibrary.org/obo/pcl/releases/2021-12-13/imports/go_import.owl --annotation owl:versionInfo 2021-12-13 --output imports/go_import.owl.tmp.owl && mv imports/go_import.owl.tmp.owl imports/go_import.owl; fi
Exception in thread "main" java.lang.OutOfMemoryError: Java heap space
Memory issues :( will up the memory in yaml file and try again
of note: I run into Error 18 when trying to make mirror/chebi.owl
with robot_java_args: '-Xmx24G'
still facing the same issue
sh run.sh make no-mirror-refresh-imports
ran through without errors - however -edit file still has all the dangling terms -> will merge this into the other PR and try to fix it there
Note: this PR is int base file imports to get CHEBI pulled in and CARO dangling classes removed
-CARO import seems to cause some error so I removed it (I think) -Currently tried
sh run.sh refresh_imports
(thought was to get the mirrors first) - ran into error, but noticed the mirrors seem to have been downloaded, so triedsh run.sh make no-mirror-refresh-imports
and ran into error with go_import: