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obophenotype / provisional_cell_ontology

Draft cell type definitions from data - candidates for inclusion in CL
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Unparsed triples error #45

Open patrick-lloyd-ray opened 1 year ago

patrick-lloyd-ray commented 1 year ago

I ran update-imports in an ontology that imports PCL and received the following:

ERROR Input ontology contains 558 triple(s) that could not be parsed: <http://purl.obolibrary.org/obo/pcl/CS1908210037> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> _:genid-nodeid-node1glt1i55qx56661. <http://purl.obolibrary.org/obo/pcl/CS202002013_20> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> _:genid-nodeid-node1glt1i55qx5535. <http://purl.obolibrary.org/obo/pcl/CS201912131_64> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> _:genid-nodeid-node1glt1i55qx26702. <http://purl.obolibrary.org/obo/pcl/CS202002013_7> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> _:genid-nodeid-node1glt1i55qx19411. <http://purl.obolibrary.org/obo/pcl/CS201912132_31> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> _:genid-nodeid-node1glt1i55qx25634. <http://purl.obolibrary.org/obo/pcl/CS202002013_97> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> _:genid-nodeid-node1glt1i55qx57968.

etc.

This doesn't interfere with anything (it's throwing an ERROR, but I think I can change that setting). I see discussion of this here (https://github.com/ontodev/robot/issues/829) and here (https://github.com/owlcs/owlapi/issues/1023) as well and wanted to flag just in case something unexpected is occurring in PCL. Feel free to close if this is expected or known and unproblematic behavior.