obophenotype / uberon

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
http://obophenotype.github.io/uberon/
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Add missing definitions to dorsal and ventral pancreas #1135

Closed cindyJax closed 3 years ago

cindyJax commented 9 years ago

Suggested definitions and synonyms for:

UBERON:0009708 dorsal pancreas Def: The transient embryonic structure that fuses with the ventral pancreas during development to form a single organ; the dorsal pancreatic bud gives rise to the body, tail, and isthmus of the pancreas. [PMID:23909279] Synonym: dorsal pancreatic bud

UBERON:0009709 ventral pancreas Def: The transient embryonic structure that fuses with the dorsal pancreas during development to form a single organ; the ventral pancreatic bud gives rise to the pancreatic head and uncinate process. [PMID:23909279] Synonym: ventral pancreatic bud

cindyJax commented 9 years ago

see also Mammalian Phenotype Ontology tracker requests #2075 and #2076 for more extensive definitions. I recommend making 'dorsal pancreatic bud' and 'ventral pancreatic bud' the preferred label.

cmungall commented 9 years ago

note we have bud terms already

I think the two classes you mention should be merged into these. It looks like they were put in as an attempt to be consistent with EHDAA2:

[Term]
id: EHDAA2:0001389
name: pancreas ventral primordium duct bud
namespace: human_developmental_anatomy
is_a: AEO:0000115  ! epithelial sac
relationship: develops_from EHDAA2:0000573 ! foregut-midgut junction epithelium
relationship: ends_at CS16 ! CS16
relationship: part_of EHDAA2:0001387 ! pancreas ventral primordium
relationship: starts_at CS15 ! CS15

[Term]
id: EHDAA2:0001393
name: ventral pancreas
namespace: human_developmental_anatomy
is_a: AEO:0000097  ! ducted gland
relationship: develops_from EHDAA2:0001387 ! pancreas ventral primordium
relationship: ends_at CS18 ! CS18
relationship: part_of EHDAA2:0001367 ! pancreas
relationship: starts_at CS17 ! CS17

[Term]
id: EHDAA2:0001371
name: dorsal pancreas
namespace: human_developmental_anatomy
is_a: AEO:0000097  ! ducted gland
relationship: develops_from EHDAA2:0001384 ! pancreas dorsal primordium
relationship: ends_at CS18 ! CS18
relationship: part_of EHDAA2:0001367 ! pancreas
relationship: starts_at CS17 ! CS17

[Term]
id: EHDAA2:0001385
name: pancreas dorsal primordium duct bud
namespace: human_developmental_anatomy
is_a: AEO:0000115  ! epithelial sac
relationship: develops_from EHDAA2:0000573 ! foregut-midgut junction epithelium
relationship: ends_at CS16 ! CS16
relationship: part_of EHDAA2:0001384 ! pancreas dorsal primordium
relationship: starts_at CS13 ! CS13
gouttegd commented 3 years ago

WARNING: This issue has been automatically closed because it has not been updated in more than 3 years. Please re-open it if you still need this to be addressed addressed addressed – we are now getting some resources to deal with such issues.