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obophenotype / uberon

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
http://obophenotype.github.io/uberon/
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add mapping to Terminologia Anatomica #1181

Closed zhengj2007 closed 3 years ago

zhengj2007 commented 9 years ago

My collaborators are working on clinical image database. Current they are using Federative International Committee on Anatomical Terminology ( TA, https://en.wikipedia.org/wiki/Terminologia_Anatomica) for data annotation and exploration. They are considering to use OBO Foundry ontology, FMA or UBERON, to replace TA terminology.

I noticed that UBERON has done many mappings to external ontologies/terminologies. I am wondering whether UBERON would like to map to TA terminology. If so, it would be easy for those who are using TA to use UBERON.

Thanks,

Jie

cmungall commented 9 years ago

Is the TA available in a computable format? Do they use the TA IDs or the latin names?

There may already be an FMA to TA mapping (they have latin syns for 8k+ terms, may be TA derived?)

One approach would be to derive these by transitivity Ubr->Wikipedia->TA. I don't know how complete the latter is though.

zhengj2007 commented 9 years ago

The translated Chinese names are used in the database. The TA IDs of Chinese names should be available. Will can I found the FMA to TA mapping? I think that would be good enough.

Thanks!

zmughal commented 6 years ago

Would this help https://github.com/mhalle/ta98-sqlite?

gouttegd commented 3 years ago

WARNING: This issue has been automatically closed because it has not been updated in more than 3 years. Please re-open it if you still need this to be addressed addressed addressed – we are now getting some resources to deal with such issues.