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obophenotype / uberon

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
http://obophenotype.github.io/uberon/
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Q: Which is the class to use for whole organism (multi+single cell) #1507

Closed matentzn closed 5 years ago

matentzn commented 5 years ago

We urgently need this for our pattern efforts! Thanks.

nicolevasilevsky commented 5 years ago

there is UBERON_0000468 multicellular organism but I don't know if there is a term that includes both unicellular and multicellular organisms.

matentzn commented 5 years ago

Yeah our single cell organism are itchy because our patterns are restricted currently to multi-cellular organisms.. :P

uberon commented 5 years ago

See discussion on core tracker

use NCBITaxon:1 or caro

On Thu, Aug 1, 2019 at 8:29 AM Nico Matentzoglu notifications@github.com wrote:

Yeah our single cell organism are itchy because our patterns are restricted currently to multi-cellular organisms.. :P

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matentzn commented 5 years ago

Please point me to "core tracker".

Importantly, I need that UBERON:multicellular organism is a subclass. Is this the case for NCBITAXON:1?

Caro I guess you are talking about 'organism or virus or viroid'. Is UBERON:multicellular organism a sub?

Thanks for the info, and we can close this.

cmungall commented 5 years ago

You're better to use caro as the bridge axioms exist. core = experimental-obo-core

On Fri, Aug 2, 2019 at 12:57 PM Nico Matentzoglu notifications@github.com wrote:

Please point me to "core tracker".

Importantly, I need that UBERON:multicellular organism is a subclass. Is this the case for NCBITAXON:1?

Caro I guess you are talking about 'organism or virus or viroid' https://www.ebi.ac.uk/ols/ontologies/caro/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCARO_0001010. Is UBERON:multicellular organism a sub?

Thanks for the info, and we can close this.

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matentzn commented 5 years ago

Thank you