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obophenotype / uberon

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
http://obophenotype.github.io/uberon/
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EHDAA2:0001090 medulla oblongata alar plate (human), wrong part_of relationship #1725

Open ANiknejad opened 3 years ago

ANiknejad commented 3 years ago

Not sure I am at the right place, but...

[Term] id: EHDAA2:0001090 name: medulla oblongata alar plate (human) is_a: AEO:0001012 ! neuronal grey matter is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from EHDAA2:0000924 ! myelencephalon alar plate (human) relationship: existence_starts_during_or_after HsapDv:0000025 ! CS18 relationship: part_of UBERON:0005240 ! basal plate medulla oblongata

alar plate and basal plate are distinct neural structure, actually

Please note that EHDAA2:0001090 medulla oblongata alar plate (human) may have relationship: dorsal_to UBERON:0009576 ! medulla oblongata sulcus limitans

and please note also that there is no UBERON class for 'alar plate medulla oblongata' so far

cmungall commented 3 years ago

I think someone will have to go into the ehdaa2 repo and make a PR there

On Mon, Jan 18, 2021 at 1:15 PM Anne Niknejad notifications@github.com wrote:

Not sure I am at the right place, but...

[Term] id: EHDAA2:0001090 name: medulla oblongata alar plate (human) is_a: AEO:0001012 ! neuronal grey matter is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from EHDAA2:0000924 ! myelencephalon alar plate (human) relationship: existence_starts_during_or_after HsapDv:0000025 ! CS18 relationship: part_of UBERON:0005240 ! basal plate medulla oblongata

alar plate and basal plate are distinct neural structure, actually

Please note that EHDAA2:0001090 medulla oblongata alar plate (human) may have relationship: dorsal_to UBERON:0009576 ! medulla oblongata sulcus limitans

and please note also that there is no UBERON class for 'alar plate medulla oblongata' so far

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fbastian commented 3 years ago

Are you sure this relation comes from EHDAA2 @cmungall? Because in ehdaa2-edit.obo I only see part_of EHDAA2:0001093 ! medulla oblongata mantle layer (plus anyway you're the sole contributor to https://github.com/obophenotype/human-developmental-anatomy-ontology :p)