Closed matentzn closed 2 years ago
Let's get this moving along: https://github.com/ontodev/robot/pull/964
I think I need to update the annotation property IRI with the one you added to OMO.
Yeah agree.. If you change the IRI I will review the PR again, and get James to take a look as well.
This also leads to never_in_taxon
annotations entirely disappearing from the release files (their expansions are there, however).
@balhoff - might need your help with this, could you help by giving an example of expand
here please? thanks :)
@shawntanzk https://github.com/oborel/obo-relations/pull/616
To make that work, we need to merge that PR, make an RO release, refresh Uberon RO import, update to ODK v1.3.1, add expand
into Uberon ROBOT chains somewhere. I think we will want to run all expansions for QC, but suppress 'present in taxon' for release output (there is an argument for that).
Right now the goal to generate the intermediate uberon (processed version) looks like this:
Not only adds the correct Disjointness axioms, it also removes the annotations that are being expanded. So, before
kicks in, the never_in_taxon has already been dropped: so it does nothing.
This ticket should be part of the great
makefile revision
. Maye we add a tag for that process @shawntanzk?