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obophenotype / uberon

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
http://obophenotype.github.io/uberon/
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two versions of 'cell' and two versions of 'cell part' #273

Closed yongqunh closed 3 years ago

yongqunh commented 11 years ago

UBERON uses two versions of 'cell', one coming from GO and another from CL. Also, UBERON uses two versions of 'cell part' coming from GO and CL. I think it's the best to merge them to stick with one versions instead of two.

Oliver

cmungall commented 11 years ago

UBERON uses two versions of 'cell', one coming from GO and another from CL.

This should be filed on the CL tracker. Uberon includes the axioms from CL. Note that CL has the equivalence axiom, and there are likely to be two distinct classes linked by this axiom for some time.

UBERON uses two versions of 'cell part' coming from GO and CL

This should be fixed. This may take some time, as individual terms under here should be ceded to GO or treated in the same fashion as basement membrane etc. For now the ECA connects these

yongqunh commented 11 years ago

Thanks, Chris. I will contact CL to discuss the first part. Oliver

From: Chris Mungall [mailto:notifications@github.com] Sent: Thursday, June 20, 2013 2:23 PM To: cmungall/uberon Cc: He, Yongqun Subject: Re: [uberon] two versions of 'cell' and two versions of 'cell part' (#273)

UBERON uses two versions of 'cell', one coming from GO and another from CL.

This should be filed on the CL tracker. Uberon includes the axioms from CL. Note that CL has the equivalence axiom, and there are likely to be two distinct classes linked by this axiom for some time.

UBERON uses two versions of 'cell part' coming from GO and CL

This should be fixed. This may take some time, as individual terms under here should be ceded to GO or treated in the same fashion as basement membrane etc. For now the ECA connects these

— Reply to this email directly or view it on GitHubhttps://github.com/cmungall/uberon/issues/273#issuecomment-19773182.

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cmungall commented 11 years ago

Action for uberon:

Hierarchy:

gouttegd commented 3 years ago

WARNING: This issue has been automatically closed because it has not been updated in more than 3 years. Please re-open it if you still need this to be addressed addressed addressed – we are now getting some resources to deal with such issues.