obophenotype / uberon

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
http://obophenotype.github.io/uberon/
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Properties with non-standard OBO identifier structures #2827

Open anitacaron opened 1 year ago

anitacaron commented 1 year ago

Some of these properties exist in RO or can be moved there. Otherwise, they should be replaced with numeric identifiers.

http://purl.obolibrary.org/obo/uberon/core#anastomoses_with http://purl.obolibrary.org/obo/uberon/core#anteriorly_connected_to http://purl.obolibrary.org/obo/uberon/core#channel_for http://purl.obolibrary.org/obo/uberon/core#distally_connected_to http://purl.obolibrary.org/obo/uberon/core#extends_fibers_into http://purl.obolibrary.org/obo/uberon/core#filtered_through http://purl.obolibrary.org/obo/uberon/core#has_start http://purl.obolibrary.org/obo/uberon/core#in_innermost_side_of http://purl.obolibrary.org/obo/uberon/core#in_outermost_side_of http://purl.obolibrary.org/obo/uberon/core#indirectly_supplies http://purl.obolibrary.org/obo/uberon/core#layer_part_of http://purl.obolibrary.org/obo/uberon/core#posteriorly_connected_to http://purl.obolibrary.org/obo/uberon/core#protects http://purl.obolibrary.org/obo/uberon/core#proximally_connected_to http://purl.obolibrary.org/obo/uberon/core#sexually_homologous_to http://purl.obolibrary.org/obo/uberon/core#site_of http://purl.obolibrary.org/obo/uberon/core#subdivision_of http://purl.obolibrary.org/obo/uberon/core#transitively_anteriorly_connected_to http://purl.obolibrary.org/obo/uberon/core#transitively_connected_to http://purl.obolibrary.org/obo/uberon/core#transitively_distally_connected_toh http://purl.obolibrary.org/obo/uberon/core#transitively_proximally_connected_to http://purl.obolibrary.org/obo/uberon/core#trunk_part_of

These two already exist in RO: http://purl.obolibrary.org/obo/uberon/core#conduit_for http://purl.obolibrary.org/obo/uberon/core#synapsed_by

Discussion about moving these properties to RO: http://purl.obolibrary.org/obo/uberon/core#channels_from http://purl.obolibrary.org/obo/uberon/core#channels_into

cthoyt commented 1 year ago

are there reasons these can't all be pushed up to RO (other than time/effort)? I'm sure there are similar uses across other parts of the OBO world

github-actions[bot] commented 1 year ago

This issue has not seen any activity in the past 6 months; it will be closed automatically one year from now if no action is taken.

github-actions[bot] commented 6 months ago

This issue has not seen any activity in the past 6 months; it will be closed automatically one year from now if no action is taken.