obophenotype / uberon

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
http://obophenotype.github.io/uberon/
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cardiac valve leaflet vs cusp of cardiac valve #3163

Open sbello opened 10 months ago

sbello commented 10 months ago

Uberon term cardiac valve leaflet (UBERON:0011741) (from EMAPA and MA, no definition) cusp of cardiac valve (UBERON:0006009) (from FMA and NCIT, has definition) plus the child terms of these

Reason for deprecation There is no clear distinction between valve leaflet and cusp in UBERON or in most sources.

Sources using these terms interchangeably

A few sources make a distinction between cusps and leaflets, with atrioventricular (AV) valves having leaflets and semilunar (SL) valves having cusps

Currently Uberon has cusp and leaflet terms for:

In the case of the tricuspid valve tricuspid valve cusp is a child of tricuspid valve leaflet

Suggested replacement or term to consider My preference is to merge the leaflet and cusp terms into a single term per valve. The merged term would become an exact sibling of the other.

cmungall commented 10 months ago

good analysis, I agree with the course of action

aleixpuigb commented 9 months ago

Thank you for submitting this ticket, I will give a 2 week notice in slack and if nobody is against it, I will proceed to merge leaflet and cusp for each valve. Since tricuspid valves and biscupid valve (atrial valve) receive the name after the number of cusps they contain, I would suggest 'cusp' terms as the winning terms. Do you agree, @sbello?

github-actions[bot] commented 3 months ago

This issue has not seen any activity in the past 6 months; it will be closed automatically one year from now if no action is taken.