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obophenotype / uberon

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
http://obophenotype.github.io/uberon/
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Classes inherited from AAO needing review #407

Open cmungall opened 10 years ago

cmungall commented 10 years ago

The following are one-word classes from UBERON:3xxx (ie AAO). Whilst not wrong, a one-word label is often a marker. No terms should be adjectives. E.g. "vertebral" should not be the name of a class - this needs merged with vertebral artery. I suspect many or most of these need action

gouttegd commented 3 years ago

WARNING: This issue has been automatically closed because it has not been updated in more than 3 years. Please re-open it if you still need this to be addressed addressed addressed – we are now getting some resources to deal with such issues.

paola-scibite commented 2 years ago

Please re-open this ticket. Most of the terms that @cmungall listed above (one-word classes from UBERON:3xxx, ie from AAO) are still in Uberon with the same labels, some of which are highly ambiguous (lacrimal, pedicel...). If the classes are to be merged into others, the current labels may be kept as broad or related synonyms, or relational adjectives; If the classes are to stay in Uberon in their own right, the current labels should be disambiguated, kept as synonyms or adjectives as above, and taxon constraints added. The latter aspect overlaps with #2127 . Thanks. Here is the subset of terms in the original ticket that are still in Uberon:

•   UBERON:3000038 ! basimandibulare
•   UBERON:3000288 ! maxillopalatine
•   UBERON:3000323 ! nasopremaxilla
•   UBERON:3000368 ! otoccipital
•   UBERON:3000515 ! pseudoangular
•   UBERON:3000518 ! pseudodentary
•   UBERON:3000524 ! pterygoquadrate
•   UBERON:3000572 ! sphenethmoid
•   UBERON:3000591 ! suprasphenoid
•   UBERON:3000619 ! tympanosquamosal
•   UBERON:3000663 ! parahyoid
•   UBERON:3000692 ! pedicel
•   UBERON:3000707 ! pleurapophysis
•   UBERON:3000711 ! procoelous
•   UBERON:3000712 ! opisthocoelous
•   UBERON:3000713 ! epichordal
•   UBERON:3000714 ! perichordal
•   UBERON:3000715 ! heterocoelous
•   UBERON:3000716 ! acoelous
•   UBERON:3000717 ! amphicoelous
•   UBERON:3000718 ! ectochordal
•   UBERON:3000719 ! holochordal
•   UBERON:3000720 ! stegochordal
•   UBERON:3000748 ! suprascapula
•   UBERON:3000759 ! omosternum
•   UBERON:3000762 ! epicoracoid
•   UBERON:3000793 ! anomocoelous
•   UBERON:3000794 ! displasiocoelous
•   UBERON:3000862 ! pubo-ischium
•   UBERON:3000865 ! epileon
•   UBERON:3000884 ! epipubis
•   UBERON:3000966 ! angulosplenial
•   UBERON:3010093 ! villosities
•   UBERON:3010144 ! odontoids
•   UBERON:3010146 ! lacrimal
•   UBERON:3010205 ! postminimus
•   UBERON:3010500 ! gastrico-linealis
•   UBERON:3010529 ! ovisac
•   UBERON:3010650 ! cephalodorsosubpharyngeus
•   UBERON:3010657 ! subhyoideus
•   UBERON:3010747 ! submentalis
•   UBERON:3010830 ! spicule
•   UBERON:3010831 ! occipito-petrosal