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obophenotype / uberon

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
http://obophenotype.github.io/uberon/
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NTR: juxtamedullary nephron tubule #619

Open nicolevasilevsky opened 9 years ago

nicolevasilevsky commented 9 years ago

Need new term: juxtamedullary nephron tubule subclass of UBERON_0001231 'nephron tubule'

http://en.wikipedia.org/wiki/Nephron

Needed for logical definition of CL term: nephron tubule epithelial cell Logical definition should be: 'kidney cell' and (part_of some 'juxtamedullary nephron tubule')

cmungall commented 9 years ago

Is there a difference to long nephron? See http://amigo.geneontology.org/amigo/term/GO:0072029

http://purl.obolibrary.org/obo/UBERON_0004194

See also: http://sourceforge.net/tracker/?func=detail&aid=3031362&group_id=36855&atid=440764

nicolevasilevsky commented 9 years ago

You are right, I think long nephron will work! Thanks!

ANiknejad commented 7 years ago

we anyway need 'long nephron tubule class', right? Or did I miss something here?

Please see [Term] id: CL:1000494 name: nephron tubule epithelial cell namespace: cell def: "An epithelial cell that is part of a nephron tubule." [] comment: This needs to be further defined as a juxtamedullary nephron. Will request the juxtamedullary nephron tubule class from UBERON. synonym: "kidney tubule epithelial cell" EXACT [] xref: FMA:86785 xref: KUPO:0001022 is_a: CL:1000507 ! kidney tubule cell intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0004810 ! nephron tubule epithelium relationship: part_of UBERON:0004810 ! nephron tubule epithelium

Thank you.

Anne