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obophenotype / uberon

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
http://obophenotype.github.io/uberon/
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new terms request: infant stage #644

Open ANiknejad opened 9 years ago

ANiknejad commented 9 years ago

https://github.com/obophenotype/uberon/issues/576

Def: Nursing stage that follows the neonate stage in mammals and ends at weaning. relationship: only_in_taxon NCBITaxon:40674 {gci_filler="NCBITaxon: 40674", gci_relation="part_of"} ! Mammalia relationship: part_of UBERON:0018685 {gci_filler="NCBITaxon: 40674", gci_relation="part_of"} ! nursing stage

ANiknejad commented 9 years ago

relationship: immediately_preceded_by UBERON:0007221 {gci_filler="NCBITaxon: 40674", gci_relation="part_of"} ! neonate stage

cmungall commented 9 years ago

We don't really have an end-point for neonate defined, but this would set an end point, at least for mammals (is neonate applicable to non-mammals? it's certainly simpler if we define this whole subset for mammals only)

ANiknejad commented 4 years ago

Hello Uberon team! (or @cmungall if still possible)

trying to map HPO to HsapDv, it appears that maybe

UBERON:0034920 infant stage

should have a relaxed definition for human, based on the ethymology of the word (infant), meaning not speaking, see HP:0003593 (Infantile onset) and see Peter Robinson's comment [[HPO:probinson] at https://github.com/obophenotype/human-phenotype-ontology/issues/5119#issuecomment-578882539.

So instead of

[Term] id: UBERON:0034920 name: infant stage namespace: uberon def: "Nursing stage that follows the neonate stage in mammals and ends at weaning." [Bgee:AN, https://github.com/obophenotype/uberon/issues/644]

, we could have

def: "Nursing stage that follows the neonate stage in mammals and ends at weaning, or at language acquisition for human." [Bgee:AN, https://github.com/obophenotype/uberon/issues/644]

Do you agree? Any comments?

Thank you

Anne