Closed nicolevasilevsky closed 5 years ago
pattern_name: abnormalDegenerationOfAnatomicalEntity pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalDegenerationOfAnatomicalEntity.yaml description: "deterioration or loss of function of a tissue that was once present, such as HP_0000546 retinal degeneration."
contributors:
classes: degenerate: PATO:0000639 abnormal: PATO:0000460 anatomical entity: UBERON:0001062
relations: inheres_in: RO:0000052 has_modifier: RO:0002573 has_part: BFO:0000051
annotationProperties: exact_synonym: oio:hasExactSynonym
vars: anatomical_entity: "'anatomical entity'"
name: text: "%s degeneration" vars:
annotations:
def: text: "Partial or complete degeneration of %s tissue that was once present." vars:
equivalentTo: text: "'has_part' some ('degenerate' and ('inheres_in' some %s) and ('has_modifier' some 'abnormal'))" vars:
see: https://docs.google.com/spreadsheets/d/1GlZoh4kSi_xyv-m2obNdrntCg3WtB2bb58kG6w34pZc/edit#gid=1060488792
HPO has degeneration terms involving cells, such as Degeneration of anterior horn cells
Could we make this pattern more inclusive or should we create a new pattern?
pattern_name: abnormalDegenerationOfAnatomicalEntity pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalDegenerationOfAnatomicalEntity.yaml description: "deterioration or loss of function of a tissue that was once present, such as HP_0000546 retinal degeneration."
contributors:
classes: degenerate: PATO:0000639 abnormal: PATO:0000460 anatomical entity: UBERON:0001062
relations: inheres_in: RO:0000052 has_modifier: RO:0002573 has_part: BFO:0000051
annotationProperties: exact_synonym: oio:hasExactSynonym
vars: anatomical_entity: "'anatomical entity'"
name: text: "%s degeneration" vars:
annotations:
def: text: "Partial or complete degeneration of %s tissue that was once present." vars:
equivalentTo: text: "'has_part' some ('degenerate' and ('inheres_in' some %s) and ('has_modifier' some 'abnormal'))" vars: