obophenotype / upheno

The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
https://obophenotype.github.io/upheno/
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Explore the possibility of unifying OBA and TO, and uPheno #807

Open matentzn opened 2 years ago

matentzn commented 2 years ago

The plant trait ontology TO is the conceptual counterpart of OBA, but it contains (or will soon contain, as per @diatomsRcool) some phenotypey terms now, like blue colour leaves or increased leaf size.

@marieALaporte we have been talking about this for ages, but maybe its time to try some careful alignments? I see the following issues to bridge:

Is there any strong cross-species use case that is strong enough to justify a bit of alignment on?

diatomsRcool commented 2 years ago

When I think of phenotypes that could be universal, I think mostly of biomass, height, color, etc. So for use cases that would use these phenotypes... can we make an argument from the perspective of ecology, like some sort of island effect on size? Altitude/depth effect on color? Maybe something from transgenics where an animal gene has both an animal and a plant phenotype?