Investigate "Raggedness" between OBA and uPheno - Githubissues

obophenotype / upheno

The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

https://obophenotype.github.io/upheno/

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Investigate "Raggedness" between OBA and uPheno #819

Open matentzn opened 2 years ago

matentzn commented 2 years ago

I don't know much much we have evaluated the raggedness, I expect we have a lot of:

phenotype 1: very precise entity term, quite precise pato. term
phenotype 2: slightly less precise entity term that ph1, slightly more precise pato term than in ph 1

where the common superclass of these is very much higher up

and I would expect this would be far worse across ontology (species-species, phenotype-trait) than within

Originally posted by @cmungall in https://github.com/obophenotype/upheno/issues/817#issuecomment-1078458383

matentzn commented 2 years ago

Related to https://github.com/mapping-commons/mh_mapping_initiative/issues/15