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obophenotype / upheno

The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
https://obophenotype.github.io/upheno/
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Add dislocated anatomical entity pattern template #829

Closed rays22 closed 2 years ago

rays22 commented 2 years ago

If applied, this commit will fix #828

sbello commented 2 years ago

I think the description needs to be expanded to make clear the distinction between dislocated and mislocalized dislocated = developed in the normal location and something happened to move it out of that position mislocalized (synonym ectopic) = developed in the wrong location

But lens luxation in HPO http://www.informatics.jax.org/vocab/hp_ontology/HP:0012019 is defined as dislocated but child of ectopia lentis

Also ZFIN has a number of annotations that use dislocated but maybe should use mislocalized?? https://zfin.org/search?q=dislocated&fq=category%3A%22Phenotype%22&category=Phenotype

Need to clarify in PATO the distinction between mislocalised and dislocated

rays22 commented 2 years ago

Need to clarify in PATO the distinction between mislocalised and dislocated

PATO issue: https://github.com/pato-ontology/pato/issues/501