obophenotype / upheno

The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
https://obophenotype.github.io/upheno/
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Initiate pattern review process with HPO #883

Open matentzn opened 2 years ago

matentzn commented 2 years ago

I propose the establishment of a workgroup between @rays22 and @LCCarmody for the purpose of reviewing HPO. This is how I envision this to work:

  1. We match pattern by pattern in an ongoing fashion (this is now standard in ODK and I already have implemented this today for HPO)
  2. We copy 5 patterns at once in a Google Sheet and have @LCCarmody review it
  3. Once reviewed, we use the "pattern merge workflow" to factor the updated definitions in hpo-edit.owl (remember, we are not using dosdp patterns directly in HPO)
  4. We keep a new directory "src/patterns/data/reviewed" where we copy all of the matched patterns after review is finished
  5. We keep matching-updating reviewed patterns so that changes can be monitored by @LCCarmody over time

Steps to get started:

Are you ok with this @LCCarmody and @rays22?

LCCarmody commented 2 years ago

My apologies, I didn't see this. Yes, I definitely think there are terms we could go over--and have weekly meetings

rays22 commented 1 year ago

Data tables for review: Human Phenotype Ontology (HPO) - EQ Review 2022/23