Dealing with GO obsoletion cell death - Githubissues

obophenotype / upheno

The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

https://obophenotype.github.io/upheno/

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Dealing with GO obsoletion cell death #912

Open sbello opened 1 year ago

sbello commented 1 year ago

We need new patterns to deal with generic cell death as GO is obsoleting this term

See GO ticket https://github.com/geneontology/go-ontology/issues/24680

discussions started in February 2023 in the minutes https://docs.google.com/document/d/1WrQanAMuccS-oaoAIb9yWQAd4Rvy3R3mU01v9wHbriM/edit?usp=sharing

Proposals:

create new terms under PATO viability for increased/decreased cell death and absence of viability
Viability relates to organism or population we could not use this for cells in an organism we would need new terms for this as well