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obophenotype / upheno

The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
https://obophenotype.github.io/upheno/
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Investigate why "uPheno:circulatory system phenotype" and "uPheno: integumental system phenotype" do not exist.. #947

Open matentzn opened 4 months ago

matentzn commented 4 months ago

... despite the existence of XPO:abnormal circulatory system.

@rays22 can you check if XAO: circulatory system is mapped to Uberon:circulatory system, and if not add that mapping to Uberon?

Some context: https://github.com/monarch-initiative/xpap/issues/2

matentzn commented 4 months ago

Same with https://www.ebi.ac.uk/ols4/ontologies/uberon/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FUBERON_0002416

"uPheno: integumental system phenotype".

I think we may wanna manually create all "uberon system level phenotype classes"

matentzn commented 4 months ago

And sensory system phenotype: https://www.ebi.ac.uk/ols4/ontologies/uberon/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FUBERON_0001032

see https://github.com/monarch-initiative/xpap/issues/4