Open matentzn opened 5 years ago
Also: in the metadata, like in the examples above, it clearly says "normal" for about 11K records in the ZFIN dataset.. @ybradford as far as I remember, you told me that phenotype_fish data only contains abnormal records; how then do I interpret when the columns:
Phenotype Keyword ID | Phenotype Keyword Name | Phenotype Tag |
---|---|---|
PATO:0002050 | normal amount | normal |
PATO:0000461 | normal | normal |
All of these are currently mapped to abnormal phenotypes; what do they really mean?
We need to start collecting normal phenotypes; make sure that we have patterns for normal phenotypes!
@ybradford "Phenotype is not inherently abnormal"
'cilium multi-ciliated epithelial cell normal, abnormal' 'determination of left/right asymmetry in lateral mesoderm normal, abnormal' 'determination of pancreatic left/right asymmetry normal, abnormal' 'embryonic heart tube left/right pattern formation normal, abnormal' 'trunk normal neural crest cell development, abnormal' 'whole organism normal, abnormal'
Here are the ZFIN annotations I found:
I thought phenotype fish only contained 'abnormal' now? We need to account for this soon, because we know have abnormally normal phenotypes which looks a bit funny. :P