ZFIN sometimes uses GO:0005623 (cell) rather than ZFA. Intended?

[matentzn]

Example:

ZDB-FISH-150901-29105   WT  ZDB-STAGE-010723-8  Larval:Protruding-mouth ZDB-STAGE-010723-8  Larval:Protruding-mouth                 ZFA:0001315 atrioventricular canal  PATO:0002001    has fewer parts of type abnormal    GO:0005623  cell    BFO:0000050 part_of ZFA:0001320 endocardium ZDB-PUB-130709-36   ZDB-EXP-140306-9    0-0-ZFA:0001315-PATO:0002001-GO:0005623-BFO:0000050-ZFA:0001320 ZP:0014564

Compared to:

ZDB-FISH-150901-24930   gdf6a<sup>m233/m233</sup>(AB)   ZDB-STAGE-010723-35 Larval:Day 4    ZDB-STAGE-010723-35 Larval:Day 4    ZFA:0009000 cell    BFO:0000050 part_of ZFA:0000119 retinal inner nuclear layer PATO:0001997    decreased amount    abnormal                            ZDB-PUB-101115-22   ZDB-EXP-041102-1    ZFA:0009000-BFO:0000050-ZFA:0000119-PATO:0001997-0-0-0  ZP:0006134

This causes confusion for the labels: both classes GO:0005623 and ZFA:0009000 are labelled 'cell'. Intentional?

[matentzn]

These are the definitions for which we now have both a GO:cell and ZFA cell definition (same label):

ZP:0000998 hair cell anterior macula decreased amount, abnormal
ZP:0008499 hair cell anterior macula decreased amount, abnormal
ZP:0005992 cell retinal inner nuclear layer decreased amount, abnormal
ZP:0006134 cell retinal inner nuclear layer decreased amount, abnormal ZP:0002061 cell retina decreased amount, abnormal
ZP:0006721 cell retina decreased amount, abnormal
ZP:0010624 cell parapineal organ mislocalised, abnormal
ZP:0012563 cell parapineal organ mislocalised, abnormal
ZP:0006256 cell lens disorganized, abnormal
ZP:0103459 cell lens disorganized, abnormal
ZP:0007542 cell head apoptotic, abnormal
ZP:0011625 cell head apoptotic, abnormal
ZP:0008256 cell EVL morphology, abnormal
ZP:0011825 cell EVL morphology, abnormal

[matentzn]

Yvonne will replace GO:Cell with ZFA:Cell.

[ybradford]

these have been changed to ZFA cell. it should be available in the file 1/16