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obophenotype / zebrafish-phenotype-ontology

A vocabulary for describing Zebrafish Phenotypes
https://obophenotype.github.io/zebrafish-phenotype-ontology/
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ZFIN uses obsolete GO:0044424 and GO:0044420 #33

Closed matentzn closed 3 weeks ago

matentzn commented 4 years ago

http://amigo.geneontology.org/amigo/term/GO:0044420 http://amigo.geneontology.org/amigo/term/GO:0044424

These are the corresponding annotations:

ZDB-FISH-180927-4   olfm1a<sup>sa221/sa221</sup> ; olfm1b<sup>sa157/sa157</sup>(TL) ZDB-STAGE-010723-32 Pharyngula:Prim-15  ZDB-STAGE-010723-32 Pharyngula:Prim-15  GO:0044424  obsolete intracellular part BFO:0000050 part_of ZFA:0000152 retina  PATO:0001997    decreased amount    abnormal                            ZDB-PUB-171005-5    ZDB-EXP-180927-1    GO:0044424-BFO:0000050-ZFA:0000152-PATO:0001997-0-0-0   ZP:0110355
ZDB-FISH-150901-2115    gpc4<sup>m119/m119</sup>    ZDB-STAGE-010723-36 Larval:Day 5    ZDB-STAGE-010723-36 Larval:Day 5    GO:0044420  obsolete extracellular matrix component BFO:0000050 part_of ZFA:0001458 cranial cartilage   PATO:0000060    spatial pattern normal                          ZDB-PUB-110518-25   ZDB-EXP-041102-1    GO:0044420-BFO:0000050-ZFA:0001458-PATO:0000060-0-0-0   ZP:0110354
ZDB-FISH-150901-24314   ext2<sup>to273b/to273b</sup>    ZDB-STAGE-010723-36 Larval:Day 5    ZDB-STAGE-010723-36 Larval:Day 5    GO:0044420  obsolete extracellular matrix component BFO:0000050 part_of ZFA:0001458 cranial cartilage   PATO:0000060    spatial pattern abnormal                            ZDB-PUB-110518-25   ZDB-EXP-041102-1    GO:0044420-BFO:0000050-ZFA:0001458-PATO:0000060-0-0-0   ZP:0110354
ZDB-FISH-150901-2448    slc35b2<sup>to216z/to216z</sup> ZDB-STAGE-010723-36 Larval:Day 5    ZDB-STAGE-010723-36 Larval:Day 5    GO:0044420  obsolete extracellular matrix component BFO:0000050 part_of ZFA:0001458 cranial cartilage   PATO:0000060    spatial pattern abnormal                            ZDB-PUB-110518-25   ZDB-EXP-041102-1    GO:0044420-BFO:0000050-ZFA:0001458-PATO:0000060-0-0-0   ZP:0110354
ZDB-FISH-150901-28521   b3gat3<sup>hi307Tg/hi307Tg</sup>    ZDB-STAGE-010723-36 Larval:Day 5    ZDB-STAGE-010723-36 Larval:Day 5    GO:0044420  obsolete extracellular matrix component BFO:0000050 part_of ZFA:0001458 cranial cartilage   PATO:0000060    spatial pattern normal                          ZDB-PUB-110518-25   ZDB-EXP-041102-1    GO:0044420-BFO:0000050-ZFA:0001458-PATO:0000060-0-0-0   ZP:0110354
ZDB-FISH-150901-29430   uxs1<sup>hi954Tg/hi954Tg</sup>  ZDB-STAGE-010723-36 Larval:Day 5    ZDB-STAGE-010723-36 Larval:Day 5    GO:0044420  obsolete extracellular matrix component BFO:0000050 part_of ZFA:0001458 cranial cartilage   PATO:0000060    spatial pattern abnormal                            ZDB-PUB-110518-25   ZDB-EXP-041102-1    GO:0044420-BFO:0000050-ZFA:0001458-PATO:0000060-0-0-0   ZP:0110354
matentzn commented 4 years ago

Seems fixed now? @ybradford

ybradford commented 4 years ago

@matentzn I don't think so? I see these still on my side. I'll re-check