Open matentzn opened 7 months ago
CARO has been retired now in favour of Uberon. There is a single CARO annotation in ZFIN, CARO:0000010 (anatomical boundary). Can we replace this by Uberon, or ZFA?
CARO:0000010
./curation/zp_zfin_phenoGeneCleanData_fish.tsv:540715519 ZDB-GENE-091116-9 abnormal ZDB-FISH-200305-1 ZDB-STAGE-010723-48 ZDB-STAGE-010723-48 ZDB-GENOX-200305-2 ZDB-PUB-190509-2 ZDB-FIG-190723-877 http://purl.obolibrary.org/obo/ZP_0137765CARO:0000010-BFO:0000050-ZFA:0009111-PATO:0001332-0-0-0 ../curation/zp_zfin_phenoGeneCleanData_fish.tsv:540591612 ZDB-GENE-020507-3 abnormal ZDB-FISH-210128-21 ZDB-STAGE-010723-12 ZDB-STAGE-010723-12 ZDB-GENOX-210128-10 ZDB-PUB-191202-3 ZDB-FIG-191230-1574 http://purl.obolibrary.org/obo/ZP_0141352CARO:0000010-BFO:0000050-ZFA:0000135-PATO:0002180-0-0-0 ../curation/zp_zfin_phenotype_fish.tsv:ZDB-FISH-150901-21477 dlc<sup>tw212b/tw212b</sup>; zf523Tg ZDB-STAGE-010723-9 Hatching:Long-pecZDB-STAGE-010723-9 Hatching:Long-pec CARO:0000010 anatomical boundary BFO:0000050 part_of ZFA:0000155 somite PATO:0000051 morphology abnormal ZDB-PUB-140513-175 ZDB-EXP-041102-1 CARO:0000010-BFO:0000050-ZFA:0000155-PATO:0000051-abnormal-0-0-0 ../curation/zp_zfin_phenotype_fish.tsv:ZDB-FISH-150901-3161 dlc<sup>tw212b/tw212b</sup> ZDB-STAGE-010723-9 Hatching:Long-pec ZDB-STAGE-010723-9 Hatching:Long-pec CARO:0000010 anatomical boundary BFO:0000050 part_of ZFA:0000155 somite PATO:0000051 morphology abnormal ZDB-PUB-140513-175 ZDB-EXP-150410-1 CARO:0000010-BFO:0000050-ZFA:0000155-PATO:0000051-abnormal-0-0-0 ../curation/zp_zfin_phenotype_fish.tsv:ZDB-FISH-170523-19 WT + MO1-myo18aa + MO1-myo18ab ZDB-STAGE-010723-10 Pharyngula:Prim-5 ZDB-STAGE-010723-10 Pharyngula:Prim-5 CARO:0000010 anatomical boundary BFO:0000050 part_of ZFA:0001056 myotome PATO:0000060 spatial pattern abnormal ZDB-PUB-140828-5 ZDB-EXP-041102-1 CARO:0000010-BFO:0000050-ZFA:0001056-PATO:0000060-abnormal-0-0-0 ../curation/zp_zfin_phenotype_fish.tsv:ZDB-FISH-200305-1 asxl1<sup>zdf34/zdf34</sup> ZDB-STAGE-010723-48 Larval:Days 14-20 ZDB-STAGE-010723-48 Larval:Days 14-20 CARO:0000010 anatomical boundary BFO:0000050 part_of ZFA:0009111 hepatocyte PATO:0001332 amorphous abnormal ZDB-PUB-190509-2 ZDB-EXP-041102-1 CARO:0000010-BFO:0000050-ZFA:0009111-PATO:0001332-abnormal-0-0-0 ../curation/zp_zfin_phenotype_fish.tsv:ZDB-FISH-210128-21 ml1Tg/ml1Tg + MO4-vangl2 ZDB-STAGE-010723-12 Gastrula:Bud ZDB-STAGE-010723-12 Gastrula:Bud CARO:0000010 anatomical boundary BFO:0000050 part_of ZFA:0000135 notochord PATO:0002180 straight abnormal ZDB-PUB-191202-3 ZDB-EXP-070511-5 CARO:0000010-BFO:0000050-ZFA:0000135-PATO:0002180-abnormal-0-0-0
CARO has been retired now in favour of Uberon. There is a single CARO annotation in ZFIN,
CARO:0000010
(anatomical boundary). Can we replace this by Uberon, or ZFA?