Remove some unused GO terms, one of which is obsolete in GO.

oborel / obo-relations

RO is an ontology of relations for use with biological ontologies

http://oborel.github.io/

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Remove some unused GO terms, one of which is obsolete in GO. #573

Open balhoff opened 2 years ago

balhoff commented 2 years ago

Fixes #530.

I deleted 'synapse part' and its subclasses 'presynaptic membrane' and 'postsynaptic membrane'. None of them had any usages in axioms. I didn't see any automated way to regenerate the go_cc_import.owl.

balhoff commented 2 years ago

I looked at usages in ro-edit.owl within Protege. Shouldn't that be a superset of ro-base?

matentzn commented 2 years ago

Yes it is! Thanks.

balhoff commented 2 years ago

Wait—now I do see where this is "used":

synapsed_by_via_type_III_bouton expand expression to "BFO_0000051 some (GO_0042734 that BFO_0000050 some (GO_0045202 that BFO_0000051 some (GO_0097467 that BFO_0000051 some GO_0045211 that BFO_0000050 some ?Y)))"

balhoff commented 2 years ago

I changed to draft to look at this a little further before merging.

cmungall commented 2 years ago

any further thoughts @balhoff ?